RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 MRPL20Q9BYC9 149 aaKnown RBP8.4□□□□□ -1.06
MCF2-209ENST00000520602 SPINK4O60575 86 aa8.4□□□□□ -1.06
MCF2-209ENST00000520602 UCNP55089 124 aa8.4□□□□□ -1.06
MCF2-209ENST00000520602 WDR25Q64LD2 544 aaPredicted RBP8.4□□□□□ -1.06
MCF2-209ENST00000520602 GATAD1Q8WUU5 269 aa8.4□□□□□ -1.06
MCF2-209ENST00000520602 RAB1CQ92928 201 aa8.4□□□□□ -1.06
MCF2-209ENST00000520602 RNASE6Q93091 150 aaKnown RBP8.4□□□□□ -1.06
MCF2-209ENST00000520602 ZNF705GA8MUZ8 300 aaPredicted RBP8.4□□□□□ -1.07
MCF2-209ENST00000520602 OR10J4P0C629 311 aa8.4□□□□□ -1.07
MCF2-209ENST00000520602 APOBEC3AP31941 199 aaPredicted RBP8.4□□□□□ -1.07
MCF2-209ENST00000520602 CEACAM8P31997 349 aaPredicted RBP8.4□□□□□ -1.07
MCF2-209ENST00000520602 SPSB3Q6PJ21 355 aa8.4□□□□□ -1.07
MCF2-209ENST00000520602 TMEM14EPQ6UXP3 125 aa8.4□□□□□ -1.07
MCF2-209ENST00000520602 FAM169BQ8N8A8 192 aa8.4□□□□□ -1.07
MCF2-209ENST00000520602 ZNF355PQ9NSJ1 428 aa8.4□□□□□ -1.07
MCF2-209ENST00000520602 CACNA1AO00555 2505 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 AP4M1O00189 453 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 TRGC2P03986 189 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 ARL14EPLP0DKL9 152 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 TIGITQ495A1 244 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 FAM122AQ96E09 287 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.39□□□□□ -1.07
MCF2-209ENST00000520602 NCBP2LA6PVI3 153 aaKnown RBP8.39□□□□□ -1.07
MCF2-209ENST00000520602 B4DEV8 164 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 MPDU1O75352 247 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 TOX4O94842 621 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 YIF1AO95070 293 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 GATA2P23769 480 aaPredicted RBP8.39□□□□□ -1.07
MCF2-209ENST00000520602 NBL1P41271 181 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 ZNF134P52741 427 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 ERVFC1-1P60608 527 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 C16orf82Q7Z2V1 217 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 OR8B3Q8NGG8 313 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 OR8B2Q96RD0 313 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 PARLQ9H300 379 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 SLC45A2Q9UMX9 530 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 LINC00312Q9Y6C7 94 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 PIEZO1Q92508 2521 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 CXorf1O96002 111 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 PRR27Q6MZM9 219 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 GAFA1Q96PS6 74 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 SIRT7Q9NRC8 400 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 HILPDAQ9Y5L2 63 aa8.39□□□□□ -1.07
MCF2-209ENST00000520602 TNRC18O15417 2968 aaPredicted RBP8.39□□□□□ -1.07
MCF2-209ENST00000520602 COLCA2A8K830 154 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 PLAUP00749 431 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 ARF6P62330 175 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 S100A12P80511 92 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 BLNKQ8WV28 456 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 IFI27L2Q9H2X8 130 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 RPUSD1Q9UJJ7 312 aaKnown RBP8.38□□□□□ -1.07
MCF2-209ENST00000520602 B9A039 149 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 C15orf65H3BRN8 121 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 RBP4P02753 201 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 GNB2P62879 340 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 HAPLN4Q86UW8 402 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 OR51G1Q8NGK1 321 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 TNCP24821 2201 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 TNRC6AQ8NDV7 1962 aaKnown RBP8.38□□□□□ -1.07
MCF2-209ENST00000520602 CHD8Q9HCK8 2581 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 ARHGAP21Q5T5U3 1957 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 S100A8P05109 93 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 IGFBP2P18065 325 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 UBE2L3P68036 154 aaKnown RBP8.38□□□□□ -1.07
MCF2-209ENST00000520602 SSX8Q7RTT4 187 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 STPG3Q8N7X2 389 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 OR10D4PQ8NGN7 298 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 OR9G1Q8NH87 305 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 GAR1Q9NY12 217 aaKnown RBP8.38□□□□□ -1.07
MCF2-209ENST00000520602 WASHC3Q9Y3C0 194 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 TIMM9Q9Y5J7 89 aa8.38□□□□□ -1.07
MCF2-209ENST00000520602 ZNF98A6NK75 572 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 MMP23AO75900 390 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 SAA1P0DJI8 122 aaPredicted RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 MEOX2P50222 304 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 BPIFB3P59826 476 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 LYPD2Q6UXB3 125 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 ZNF788Q6ZQV5 615 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 ZNF383Q8NA42 475 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 OR4C13Q8NGP0 309 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 OR2T10Q8NGZ9 312 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 P2RX4Q99571 388 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 TOLLIPQ9H0E2 274 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 TECRQ9NZ01 308 aaKnown RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 TIMM8BQ9Y5J9 83 aaPredicted RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 ARFGEF3Q5TH69 2177 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 PPIAL4CA0A0B4J2A2 164 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 A0A1W2PN81 502 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 IGLV2-14P01704 120 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 PPIAL4GP0DN37 164 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 FABP4P15090 132 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 FAM3BP58499 235 aaPredicted RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 SUMO1P63165 101 aaKnown RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 OR4X1Q8NH49 305 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 RBFOX2O43251 390 aaKnown RBP eCLIP8.37□□□□□ -1.07
MCF2-209ENST00000520602 IGKV1-16P04430 117 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 IL6RP08887 468 aaPredicted RBP8.37□□□□□ -1.07
MCF2-209ENST00000520602 KLRB1Q12918 225 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 TMEM200BQ69YZ2 307 aa8.37□□□□□ -1.07
MCF2-209ENST00000520602 C22orf34Q6ZV56 151 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms