RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 CTXND1A0A1B0GTU2 59 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 RPS20P60866 119 aaKnown RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 MEF2CQ06413 473 aaPredicted RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 COX19Q49B96 90 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 PDLIM3Q53GG5 364 aaPredicted RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 MIC13Q5XKP0 118 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 MKXQ8IYA7 352 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 OR1F12Q8NHA8 337 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 ANAPC13Q9BS18 74 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 UBTD1Q9HAC8 227 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 TP53TG3Q9ULZ0 132 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 PXMP4Q9Y6I8 212 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 C2orf16Q68DN1 1984 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 IGLC7A0M8Q6 106 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 LRP5LA4QPB2 252 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 SH2D7A6NKC9 451 aaPredicted RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 NEURL1O76050 574 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 FUT6P51993 359 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 ADIPOQQ15848 244 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 RNF183Q96D59 192 aa8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 PSMG3Q9BT73 122 aaPredicted RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 C19orf25Q9UFG5 118 aaPredicted RBP8.51□□□□□ -1.05
PDGFRB-207ENST00000520579 SPTY2D1-AS1A0A0U1RR47 76 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 C5orf49A4QMS7 147 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 H3BUT2 72 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 RPL32P62910 135 aaKnown RBP8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 ZP4Q12836 540 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 VKORC1L1Q8N0U8 176 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 OR8G5Q8NG78 346 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 MBD3L1Q8WWY6 194 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 MRPS16Q9Y3D3 137 aaKnown RBP8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 TNCP24821 2201 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 NCOR1O75376 2440 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 A0A0G2JMM0 328 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 A0A1W2PPB8 328 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 KIR3DP1A8MWS1 328 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 IGKV1-39P01597 117 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 IGKV1D-39P04432 117 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 LINC00271P0C7V0 271 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 ARL14EPLP0DKL9 152 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 GABRG2P18507 467 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 P2RX4Q99571 388 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 TEX48A0A1B0GUV7 120 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 CXCL13O43927 109 aa8.5□□□□□ -1.05
PDGFRB-207ENST00000520579 TRANK1O15050 2925 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 A0A1W2PQD3 144 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 AAED1Q7RTV5 226 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 FGFRL1Q8N441 504 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 STRADBQ9C0K7 418 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 CRISPLD2Q9H0B8 497 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 C11orf1Q9H5F2 150 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 EML6Q6ZMW3 1958 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 C7orf71A4D174 169 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 FAM231BA6NCW3 169 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 HSBP1O75506 76 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 TIAF1O95411 115 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 C3orf79P0CE67 100 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 IGFBP4P22692 258 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 RPL15P61313 204 aaKnown RBP8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 PRDX4Q13162 271 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 SSBP4Q9BWG4 385 aaPredicted RBP8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 NPVFQ9HCQ7 196 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 THSD7BQ9C0I4 1608 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 TRBV20OR9-2A0A075B6H5 130 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 ISLRO14498 428 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 TIMP3P35625 211 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 ACSF3Q4G176 576 aaPredicted RBP8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 FAM110AQ9BQ89 295 aa8.49□□□□□ -1.05
PDGFRB-207ENST00000520579 CER1O95813 267 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 NGFP01138 241 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 LINC00310P59036 64 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 CD300EQ496F6 205 aaPredicted RBP8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 MOB1BQ7L9L4 216 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 PYGO2Q9BRQ0 406 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 CLEC1BQ9P126 229 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 H0Y980 276 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 IGHV4-34P06331 123 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 IGLC1P0CG04 106 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 CCL1P22362 96 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 CLDN15P56746 228 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 SERF2P84101 59 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 NRN1LQ496H8 165 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 TMEM240Q5SV17 173 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 TMEM211Q6ICI0 200 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 ZNF562Q6V9R5 426 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 DAZAP1Q96EP5 407 aaKnown RBP8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 OR2D2Q9H210 308 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 HSPB8Q9UJY1 196 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 OR2W1Q9Y3N9 320 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 GRPP07492 148 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 WNT2P09544 360 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 FOXA3P55318 350 aaPredicted RBP8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 GAGE5Q13069 117 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 GAGE6Q13070 117 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 MMD2Q8IY49 270 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 UBALD2Q8IYN6 164 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 OR52E5Q8NH55 327 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 SSC4DQ8WTU2 575 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 RAB1CQ92928 201 aa8.48□□□□□ -1.05
PDGFRB-207ENST00000520579 ABHD14BQ96IU4 210 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms