RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 PFDN5Q99471 154 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 PHB2Q99623 299 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 NIT2Q9NQR4 276 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 ALG5Q9Y673 324 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 FN1P02751 2386 aaKnown RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 A0A1B0GV90 55 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 UBE2CO00762 179 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 SCO1O75880 301 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 S1PR2O95136 353 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 MOSP00540 346 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 HRASP01112 189 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 IGLV2-23P01705 113 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 IGKV1-16P04430 117 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 SERPINE2P07093 398 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 SNRNP70P08621 437 aaKnown RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 P0C879 139 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 STAG3L3P0CL85 134 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 FOLR2P14207 255 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 NQO2P16083 231 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 CDKN1BP46527 198 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 NUTF2P61970 127 aaKnown RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 LRRC75BQ2VPJ9 315 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 DEFB112Q30KQ8 113 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 Q5BKY6 102 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 OR2B11Q5JQS5 317 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 TEX261Q6UWH6 196 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 Q6YL49 198 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 HSD17B13Q7Z5P4 300 aaPredicted RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 OR2D3Q8NGH3 330 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 OR2T10Q8NGZ9 312 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 COQ8AQ8NI60 647 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 CASTOR1Q8WTX7 329 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 LSM10Q969L4 123 aaKnown RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 FLYWCH2Q96CP2 140 aaKnown RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 EAF1Q96JC9 268 aaPredicted RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 ZNF48Q96MX3 618 aaPredicted RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 SPXQ9BT56 116 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 OR51J1Q9H342 316 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 CDC42EP3Q9UKI2 254 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 FAM96BQ9Y3D0 163 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 SOX21Q9Y651 276 aaPredicted RBP5.77□□□□□ -1.49
NUP54-204ENST00000506098 U3KQ87 197 aa5.77□□□□□ -1.49
NUP54-204ENST00000506098 IGHV3-72A0A0B4J1Y9 119 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 SRRM4A7MD48 611 aaKnown RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 DNASE2O00115 360 aaPredicted RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 MED6O75586 246 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 EIF3GO75821 320 aaKnown RBP eCLIP5.76□□□□□ -1.49
NUP54-204ENST00000506098 ATG12O94817 140 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 SCAF4O95104 1147 aaKnown RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 NDUFA3O95167 84 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 IGKV1D-33P01593 117 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 IGKV1-33P01594 117 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 IGKV1-5P01602 117 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 CRYGBP07316 175 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 FGF2P09038 288 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 FAM106CPP0CH98 169 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 SLC25A6P12236 298 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 VDAC1P21796 283 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 SRP14P37108 136 aaKnown RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 IER3P46695 156 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 RRAS2P62070 204 aaPredicted RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 RPS16P62249 146 aaKnown RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 NHLH2Q02577 135 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 SCGB2A2Q13296 93 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 FBLN7Q53RD9 439 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 NMSQ5H8A3 153 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 TMEM268Q5VZI3 342 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 IL17RELQ6ZVW7 336 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 LYZL2Q7Z4W2 148 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 ZNF695Q8IW36 515 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 FAM219AQ8IW50 185 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 PUSL1Q8N0Z8 303 aaKnown RBP5.76□□□□□ -1.49
NUP54-204ENST00000506098 SLC35G3Q8N808 338 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 NPBQ8NG41 125 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 C22orf15Q8WYQ4 148 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 RITA1Q96K30 269 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 HARBI1Q96MB7 349 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 ATP6V0BQ99437 205 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 RAB18Q9NP72 206 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 PLSCR3Q9NRY6 295 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 BET1LQ9NYM9 111 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 PRR13Q9NZ81 148 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 UBQLN2Q9UHD9 624 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 TMED3Q9Y3Q3 217 aa5.76□□□□□ -1.49
NUP54-204ENST00000506098 CUBNO60494 3623 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 MDFIC2A0A1B0GVS7 189 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 RPS10-NUDT3A0A1W2PQS6 291 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 A6NDX4 124 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 SPDEFO95238 335 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 SULT1A3P0DMM9 295 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 SULT1A4P0DMN0 295 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 CD24P25063 80 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 G6PCP35575 357 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 UBE2KP61086 200 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 SRSF4Q08170 494 aaKnown RBP5.75□□□□□ -1.49
NUP54-204ENST00000506098 PSG5Q15238 335 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 MRGPRG-AS1Q2M3A8 158 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 C2orf68Q2NKX9 166 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 GGNBP1Q5YKI7 109 aa5.75□□□□□ -1.49
NUP54-204ENST00000506098 OR4A47Q6IF82 309 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms