RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 CCDC32Q9BV29 185 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 Q9N2K0 584 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 FCGR3AP08637 254 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 SCTP09683 121 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 GNG2P59768 71 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 MRPS15P82914 257 aaKnown RBP12.24□□□□□ -0.45
VIM-208ENST00000497849 RNASE12Q5GAN4 147 aaKnown RBP12.24□□□□□ -0.45
VIM-208ENST00000497849 ADAD2Q8NCV1 583 aaKnown RBP12.24□□□□□ -0.45
VIM-208ENST00000497849 OR52B4Q8NGK2 314 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 CACNG8Q8WXS5 425 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 C12orf4Q9NQ89 552 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 DMRT1Q9Y5R6 373 aa12.24□□□□□ -0.45
VIM-208ENST00000497849 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.23□□□□□ -0.45
VIM-208ENST00000497849 TRBV6-6A0A0A6YYG2 114 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 GSTT2P0CG29 244 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 GSTT2BP0CG30 244 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 EXOSC2Q13868 293 aaKnown RBP12.23□□□□□ -0.45
VIM-208ENST00000497849 MRGPRG-AS1Q2M3A8 158 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 PDPNQ86YL7 162 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 GVQW1Q8N7I0 195 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 ABHD1Q96SE0 405 aa12.23□□□□□ -0.45
VIM-208ENST00000497849 SDHCQ99643 169 aaPredicted RBP12.23□□□□□ -0.45
VIM-208ENST00000497849 RIMS4Q9H426 269 aaPredicted RBP12.23□□□□□ -0.45
VIM-208ENST00000497849 PPP5D1E7EU14 171 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 ITGB1BP1O14713 200 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 CTDSPLO15194 276 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 UPK1BO75841 260 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 HLA-AP01891 365 aaKnown RBP12.22□□□□□ -0.45
VIM-208ENST00000497849 PRH1P02810 166 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 CBLN1P23435 193 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 MRPS10P82664 201 aaKnown RBP12.22□□□□□ -0.45
VIM-208ENST00000497849 RHOGP84095 191 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 ARL6IP1Q15041 203 aa12.22□□□□□ -0.45
VIM-208ENST00000497849 C11orf54Q9H0W9 315 aaPredicted RBP12.22□□□□□ -0.45
VIM-208ENST00000497849 IGKV1-6A0A0C4DH72 117 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 TRDCB7Z8K6 153 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 LGALS9O00182 355 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 OR9G9P0C7N8 305 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 PRSS3P35030 304 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 HLA-DRB3P79483 266 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 TM4SF20Q53R12 229 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 ZNF57Q68EA5 555 aaPredicted RBP12.21□□□□□ -0.45
VIM-208ENST00000497849 LINC00336Q6ZUF6 198 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 TMEM217Q8N7C4 229 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 RNF183Q96D59 192 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 MLXQ9UH92 298 aa12.21□□□□□ -0.45
VIM-208ENST00000497849 HSPG2P98160 4391 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 TRBV9A0A0B4J1U6 114 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 FAM223BA6NKX1 122 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 GSTZ1O43708 216 aaPredicted RBP12.2□□□□□ -0.46
VIM-208ENST00000497849 SCAF4O95104 1147 aaKnown RBP12.2□□□□□ -0.46
VIM-208ENST00000497849 IL7P13232 177 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 APOC4P55056 127 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 ATP5G2Q06055 141 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 BAK1Q16611 211 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 IGSF11Q5DX21 431 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 TRIQKQ629K1 86 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 FAM223AQ8IWN6 122 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 FCAMRQ8WWV6 532 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 PHB2Q99623 299 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 OR1A1Q9P1Q5 309 aa12.2□□□□□ -0.46
VIM-208ENST00000497849 GABARAPH6UMI1 98 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 FABP7O15540 132 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 OR2C1O95371 312 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 APOA2P02652 100 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 DTYMKP23919 212 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 INPP1P49441 399 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 MOB1BQ7L9L4 216 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 SMIM4Q8WVI0 70 aa12.19□□□□□ -0.46
VIM-208ENST00000497849 TMEM213A2RRL7 107 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 SRRM4A7MD48 611 aaKnown RBP12.18□□□□□ -0.46
VIM-208ENST00000497849 SULT1C2O00338 296 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 UBE2CO00762 179 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 BET1O15155 118 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 TUSC2O75896 110 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 CEACAM6P40199 344 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 NANOS2P60321 138 aaKnown RBP12.18□□□□□ -0.46
VIM-208ENST00000497849 IFITM3Q01628 133 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 ANKRD55Q3KP44 614 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 HOGA1Q86XE5 327 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 LYSMD2Q8IV50 215 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 OR52I2Q8NH67 350 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 GPX8Q8TED1 209 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 EDARADDQ8WWZ3 215 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 SCPEP1Q9HB40 452 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 SLC35D1Q9NTN3 355 aa12.18□□□□□ -0.46
VIM-208ENST00000497849 GGCTO75223 188 aaKnown RBP12.17□□□□□ -0.46
VIM-208ENST00000497849 CTRB1P17538 263 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 DEFA1P59665 94 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 DEFA3P59666 94 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 CTRB2Q6GPI1 263 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 GPHB5Q86YW7 130 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 UXS1Q8NBZ7 420 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 BEST4Q8NFU0 473 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 IFT46Q9NQC8 304 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 MGAT4AQ9UM21 535 aa12.17□□□□□ -0.46
VIM-208ENST00000497849 ZBTB25P24278 435 aa12.16□□□□□ -0.46
VIM-208ENST00000497849 C15orf32Q32M92 178 aa12.16□□□□□ -0.46
VIM-208ENST00000497849 BTNL8Q6UX41 500 aa12.16□□□□□ -0.46
VIM-208ENST00000497849 Q6ZS49 121 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms