RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 IMMP2LQ96T52 175 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 MIEN1Q9BRT3 115 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 TMEM222Q9H0R3 208 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 OR51I2Q9H344 312 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 PAQR5Q9NXK6 330 aaPredicted RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 TP73-AS1Q9UF72 201 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 KDM5BQ9UGL1 1544 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 KIF13BQ9NQT8 1826 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 DOCK10Q96BY6 2186 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 TMSB15BA0A087X1C1 80 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 TRGV5A0A0B4J1U4 118 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 IGHV1-69-2A0A0G2JMI3 117 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 A0A0J9YY10 115 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 A0A1B0GX78 115 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 SMIM9A6NGZ8 99 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 CLDN24A6NM45 220 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF705FA8MVS1 300 aaPredicted RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 DISC1C4P0D8 188 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 M0R036 132 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 KPNA3O00505 521 aaPredicted RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 BHLHE40O14503 412 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 TXNDC9O14530 226 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 LEPROTO15243 131 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 NPYP01303 97 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 OR5G3P0C626 314 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 MYL12AP19105 171 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 CA5AP35218 305 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 RPL28P46779 137 aaKnown RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 SPCS3P61009 180 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 GNA12Q03113 381 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 FABP9Q0Z7S8 132 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 RGS21Q2M5E4 152 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 ACOT6Q3I5F7 207 aaPredicted RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 KRTAP21-3Q3LHN1 58 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 C5orf46Q6UWT4 87 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 SSX8Q7RTT4 187 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 TRAPPC5Q8IUR0 188 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 CLDN22Q8N7P3 220 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 OR5B17Q8NGF7 314 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 OR4X2Q8NGF9 303 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 OR4X1Q8NH49 305 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 IMP4Q96G21 291 aaKnown RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 C8orf76Q96K31 380 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 CNBD2Q96M20 576 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 TIMM21Q9BVV7 248 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 OR51V1Q9H2C8 321 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 VCX3BQ9H321 246 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 NDUFB11Q9NX14 153 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 ANGPT4Q9Y264 503 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 LSM5Q9Y4Y9 91 aaKnown RBP0.81□□□□□ -2.28
CPSF3-205ENST00000489629 PCNTO95613 3336 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 COL4A1P02462 1669 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 MTUS2Q5JR59 1369 aa0.81□□□□□ -2.28
CPSF3-205ENST00000489629 MYOFQ9NZM1 2061 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 PXDNLA1KZ92 1463 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FREM1Q5H8C1 2179 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 MYH7BA7E2Y1 1941 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RIMBP3CA6NJZ7 1639 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RIMBP3BA6NNM3 1639 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RIMBP3Q9UFD9 1639 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FAM236DA0A1B0GTK5 79 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 SIGLEC16A6NMB1 481 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 TRAPPC2LH3BP13 241 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FAAHO00519 579 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 CNIH1O95406 144 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 KRT75O95678 551 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 LGALS1P09382 135 aaKnown RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 CTXN2P0C2S0 81 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FAM236CP0DP71 79 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 UCHL3P15374 230 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 HIST1H1TP22492 207 aaPredicted RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 HLA-DMBP28068 263 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 S100A7P31151 101 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RPL5P46777 297 aaKnown RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 EVX1P49640 407 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 SULT1A1P50225 295 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 OR4D2P58180 307 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FXYD7P58549 80 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 ERVS71-1P61550 626 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 KCNJ8Q15842 424 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 BATFQ16520 125 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 MIAQ16674 131 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 HIST3H3Q16695 136 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 Q6ZRN7 208 aaPredicted RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 S100A7AQ86SG5 101 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 LHFPL1Q86WI0 220 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 LRRC28Q86X40 367 aaPredicted RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 DCANP1Q8TF63 244 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 PPP1R14BQ96C90 147 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF625Q96I27 306 aaPredicted RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RNASE7Q9H1E1 156 aaKnown RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 FKBP14Q9NWM8 211 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 MRPL27Q9P0M9 148 aaKnown RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 VPS29Q9UBQ0 182 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 NAT8Q9UHE5 227 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 AK3Q9UIJ7 227 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 HHLA3Q9XRX5 114 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 TIMM22Q9Y584 194 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RP1L1Q8IWN7 2480 aaPredicted RBP0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms