RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 RSRP1Q9BUV0 290 aa16.2■□□□□ 0.18
LIME1-207ENST00000489212 CRYGCP07315 174 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 LPAR6P43657 344 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 TMBIM6P55061 237 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 ATP5G2Q06055 141 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 HAPLN4Q86UW8 402 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 NECAP1Q8NC96 275 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 DMBX1Q8NFW5 382 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 DYNC2LI1Q8TCX1 351 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 FANCD2OSQ96PS1 177 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 MTFP1Q9UDX5 166 aa16.19■□□□□ 0.18
LIME1-207ENST00000489212 DPPA5A6NC42 116 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 MARCH11A6NNE9 402 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 TPPPO94811 219 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 LY86O95711 162 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 REG1AP05451 166 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 SPNP16150 400 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 CTRB1P17538 263 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 PSMB6P28072 239 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 RPL5P46777 297 aaKnown RBP16.18■□□□□ 0.18
LIME1-207ENST00000489212 SYNJ2BPP57105 145 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 C15orf32Q32M92 178 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 CTRB2Q6GPI1 263 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 IL34Q6ZMJ4 242 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 OR4C12Q96R67 309 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 B9D2Q9BPU9 175 aa16.18■□□□□ 0.18
LIME1-207ENST00000489212 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.17■□□□□ 0.18
LIME1-207ENST00000489212 BMPR1BO00238 502 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 RGS5O15539 181 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 CD3DP04234 171 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 UCP3P55916 312 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 KLK9Q2XQG4 91 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 LPCAT3Q6P1A2 487 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 BCL7BQ9BQE9 202 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 ELOVL1Q9BW60 279 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 CCDC59Q9P031 241 aaKnown RBP16.17■□□□□ 0.18
LIME1-207ENST00000489212 FBXL7Q9UJT9 491 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 KLK9Q9UKQ9 250 aa16.17■□□□□ 0.18
LIME1-207ENST00000489212 IGLC7A0M8Q6 106 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 NDUFB8O95169 186 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 KRASP01116 189 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 G6PCP35575 357 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 ERVK-16P61578 105 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 CD69Q07108 199 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 DCTN2Q13561 401 aaKnown RBP16.16■□□□□ 0.18
LIME1-207ENST00000489212 TBC1D26Q86UD7 250 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 LHFPL1Q86WI0 220 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 SLC38A6Q8IZM9 456 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 OR4D10Q8NGI6 311 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 OR9G4Q8NGQ1 327 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 OR6Q1Q8NGQ2 317 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 DMRT1Q9Y5R6 373 aa16.16■□□□□ 0.18
LIME1-207ENST00000489212 FGF2P09038 288 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 RPEL1Q2QD12 228 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 RNASE10Q5GAN6 216 aaKnown RBP16.15■□□□□ 0.18
LIME1-207ENST00000489212 C11orf87Q6NUJ2 197 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 C15orf40Q8WUR7 153 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 COMMD5Q9GZQ3 224 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 NSG2Q9Y328 171 aa16.15■□□□□ 0.18
LIME1-207ENST00000489212 TEX50A0A1B0GTY4 177 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 H3BMQ9 156 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 IGLV1-51P01701 117 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 IGHV3-23P01764 117 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 CD74P04233 296 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 IFNA6P05013 189 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 OR10W1Q8NGF6 305 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 ISOC1Q96CN7 298 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 QTRT1Q9BXR0 403 aaKnown RBP16.14■□□□□ 0.17
LIME1-207ENST00000489212 S4R3C0 116 aa16.14■□□□□ 0.17
LIME1-207ENST00000489212 IGLV11-55A0A075B6I3 123 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 PPP5D1E7EU14 171 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 GABARAPH6UMI1 98 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 IGKV1-39P01597 117 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 IGKV1D-39P04432 117 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 CSN3P07498 182 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 GP9P14770 177 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 PI3P19957 117 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 TBPP20226 339 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 CADM3Q8N126 398 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 ARRDC1Q8N5I2 433 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 TMEM229BQ8NBD8 167 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 CCDC140Q96MF4 163 aa16.13■□□□□ 0.17
LIME1-207ENST00000489212 SRSF8Q9BRL6 282 aaKnown RBP16.13■□□□□ 0.17
LIME1-207ENST00000489212 SLIRPQ9GZT3 109 aaKnown RBP16.13■□□□□ 0.17
LIME1-207ENST00000489212 FAM212BQ9NTI7 297 aaPredicted RBP16.13■□□□□ 0.17
LIME1-207ENST00000489212 HUWE1Q7Z6Z7 4374 aaKnown RBP16.12■□□□□ 0.17
LIME1-207ENST00000489212 DHFRP00374 187 aa16.12■□□□□ 0.17
LIME1-207ENST00000489212 S100GP29377 79 aa16.12■□□□□ 0.17
LIME1-207ENST00000489212 DIRAS2Q96HU8 199 aa16.12■□□□□ 0.17
LIME1-207ENST00000489212 NDUFA4L2Q9NRX3 87 aa16.12■□□□□ 0.17
LIME1-207ENST00000489212 DBX1A6NMT0 343 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 HLA-AP01891 365 aaKnown RBP16.11■□□□□ 0.17
LIME1-207ENST00000489212 TRAPPC2P0DI81 140 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 TRAPPC2BP0DI82 140 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 DEFA4P12838 97 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 PGAM2P15259 253 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 HIST1H1BP16401 226 aaKnown RBP16.11■□□□□ 0.17
LIME1-207ENST00000489212 PTBP1P26599 531 aaKnown RBP eCLIP16.11■□□□□ 0.17
LIME1-207ENST00000489212 TAS2R19P59542 299 aa16.11■□□□□ 0.17
LIME1-207ENST00000489212 RND3P61587 244 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms