RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 TMEM161BQ8NDZ6 487 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 OR2T4Q8NH00 348 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 ZNF675Q8TD23 568 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 HAVCR2Q8TDQ0 301 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 SLC7A6Q92536 515 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 CCL13Q99616 98 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 ULBP3Q9BZM4 244 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 OR51I2Q9H344 312 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 C8orf4Q9NR00 106 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 C3orf18Q9UK00 162 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 RAD50Q92878 1312 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 ABCC12Q96J65 1359 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 TRAV38-1A0A0B4J264 116 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 A0A0J9YW62 118 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 SMIM23A6NLE4 172 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 C21orf140B9A014 251 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 ACOX3O15254 700 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 PLA2G10O15496 165 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 ORC5O43913 435 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 NIPSNAP2O75323 286 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 DCTN3O75935 186 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 LYPLA2O95372 231 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 AHSA1O95433 338 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 APOMO95445 188 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 NSA2O95478 260 aaKnown RBP0.78□□□□□ -2.28
PTPN4-212ENST00000488896 UBBP0CG47 229 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 UCHL3P15374 230 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 MSNP26038 577 aaKnown RBP0.78□□□□□ -2.28
PTPN4-212ENST00000488896 ALDH3A1P30838 453 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 CA5AP35218 305 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 AP2S1P53680 142 aaPredicted RBP0.78□□□□□ -2.28
PTPN4-212ENST00000488896 OR4D2P58180 307 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 RAB14P61106 215 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 GRK1Q15835 563 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 MIAQ16674 131 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 LRRC75BQ2VPJ9 315 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 PLPPR5Q32ZL2 321 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 COQ5Q5HYK3 327 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 TMEM42Q69YG0 159 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 PTRHD1Q6GMV3 140 aaKnown RBP0.78□□□□□ -2.28
PTPN4-212ENST00000488896 C5orf46Q6UWT4 87 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 SLC36A1Q7Z2H8 476 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 BPIFA4PQ86YQ2 179 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 C10orf67Q8IYJ2 551 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 SGMS2Q8NHU3 365 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 JOSD2Q8TAC2 188 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 KLK6Q92876 244 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 CCDC42Q96M95 316 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 DOHHQ9BU89 302 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 CYSTM1Q9H1C7 97 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 OR51I1Q9H343 314 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 XPNPEP1Q9NQW7 623 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 ANAPC10Q9UM13 185 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 GUCA1BQ9UMX6 200 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 PRELID1Q9Y255 219 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 PKIGQ9Y2B9 76 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 COQ4Q9Y3A0 265 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 ADCY9O60503 1353 aa0.78□□□□□ -2.28
PTPN4-212ENST00000488896 MUC5BQ9HC84 5762 aaPredicted RBP0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TRBV20OR9-2A0A075B6H5 130 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 IGHV1-69-2A0A0G2JMI3 117 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 OR4C45A6NMZ5 311 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 HMSDA8MTL9 139 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 H7C2G1 150 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 KCNK1O00180 336 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 LEPROTO15243 131 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 IFNA5P01569 189 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CRPP02741 224 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TRGC1P0CF51 173 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 C8orf88P0DMB2 117 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 GPX2P18283 190 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CCL1P22362 96 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 HLA-DMBP28068 263 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 RPL28P46779 137 aaKnown RBP0.77□□□□□ -2.29
PTPN4-212ENST00000488896 AQP4P55087 323 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TPI1P60174 286 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 NAA20P61599 178 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 POLR2GP62487 172 aaKnown RBP eCLIP0.77□□□□□ -2.29
PTPN4-212ENST00000488896 MGAT3Q09327 533 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 PMAIP1Q13794 54 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 NNATQ16517 81 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 GUK1Q16774 197 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TNFAIP8L3Q5GJ75 292 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 GLT8D1Q68CQ7 371 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 LYZL1Q6UWQ5 148 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 SSX8Q7RTT4 187 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 KTN1-AS1Q86SY8 53 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TRAPPC5Q8IUR0 188 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 SLC22A24Q8N4F4 322 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 ANKRD29Q8N6D5 301 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 WFDC11Q8NEX6 87 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 RNF133Q8WVZ7 376 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 DNAJC9Q8WXX5 260 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 PTH2Q96A98 100 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CNBD2Q96M20 576 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 PPP1R2P1Q96PQ5 205 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 GINS4Q9BRT9 223 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CST9LQ9H4G1 147 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CMTM6Q9NX76 183 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 TIMM22Q9Y584 194 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms