RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CMTM1Q8IZ96 169 aa16.61■□□□□ 0.25
COL9A3-211ENST00000477612 SRSF8Q9BRL6 282 aaKnown RBP16.61■□□□□ 0.25
COL9A3-211ENST00000477612 HRASLSQ9HDD0 168 aa16.61■□□□□ 0.25
COL9A3-211ENST00000477612 FAM212BQ9NTI7 297 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-211ENST00000477612 SMAD5-AS1Q9Y6J3 95 aa16.61■□□□□ 0.25
COL9A3-211ENST00000477612 TRAV3A0A0B4J244 114 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 OR2J3O76001 311 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 RLN1P04808 185 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 MYOD1P15172 320 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 AREGP15514 252 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 UCP3P55916 312 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 SYNJ2BPP57105 145 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 OR2B8PP59922 312 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 RPEL1Q2QD12 228 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 C15orf32Q32M92 178 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 ZNF585BQ52M93 769 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 GPR141Q7Z602 305 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 DGCR14Q96DF8 476 aaKnown RBP16.6■□□□□ 0.25
COL9A3-211ENST00000477612 TMEM140Q9NV12 185 aa16.6■□□□□ 0.25
COL9A3-211ENST00000477612 DPPA5A6NC42 116 aa16.59■□□□□ 0.25
COL9A3-211ENST00000477612 BMPR1BO00238 502 aa16.59■□□□□ 0.25
COL9A3-211ENST00000477612 RSRP1Q9BUV0 290 aa16.59■□□□□ 0.25
COL9A3-211ENST00000477612 FAM25AB3EWG3 89 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 FAM25CB3EWG5 89 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 FAM25GB3EWG6 89 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 DHFRP00374 187 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 CSN3P07498 182 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 HIST1H1BP16401 226 aaKnown RBP16.58■□□□□ 0.24
COL9A3-211ENST00000477612 TSPAN5P62079 268 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 DMBX1Q8NFW5 382 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 FCAMRQ8WWV6 532 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 COMMD5Q9GZQ3 224 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 FBXL7Q9UJT9 491 aa16.58■□□□□ 0.24
COL9A3-211ENST00000477612 IGLV11-55A0A075B6I3 123 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 IGLC7A0M8Q6 106 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 MARCH11A6NNE9 402 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 LPAR6P43657 344 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 MECP2P51608 486 aaKnown RBP16.57■□□□□ 0.24
COL9A3-211ENST00000477612 THOC7Q6I9Y2 204 aaKnown RBP16.57■□□□□ 0.24
COL9A3-211ENST00000477612 C19orf35Q6ZS72 473 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 C15orf40Q8WUR7 153 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 EXTL2Q9UBQ6 330 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 KLK11Q9UBX7 282 aa16.57■□□□□ 0.24
COL9A3-211ENST00000477612 NDUFB8O95169 186 aa16.56■□□□□ 0.24
COL9A3-211ENST00000477612 ABHD1Q96SE0 405 aa16.56■□□□□ 0.24
COL9A3-211ENST00000477612 MIXL1Q9H2W2 232 aa16.56■□□□□ 0.24
COL9A3-211ENST00000477612 PEMTQ9UBM1 199 aa16.56■□□□□ 0.24
COL9A3-211ENST00000477612 MTFP1Q9UDX5 166 aa16.56■□□□□ 0.24
COL9A3-211ENST00000477612 PTBP1P26599 531 aaKnown RBP eCLIP16.55■□□□□ 0.24
COL9A3-211ENST00000477612 ERVK-16P61578 105 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 SPCS2Q15005 226 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 HSD17B13Q7Z5P4 300 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-211ENST00000477612 HAPLN4Q86UW8 402 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 LHFPL1Q86WI0 220 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 SLC38A6Q8IZM9 456 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 Q8N1Y9 231 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 OR52I2Q8NH67 350 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 BCL7BQ9BQE9 202 aa16.55■□□□□ 0.24
COL9A3-211ENST00000477612 QTRT1Q9BXR0 403 aaKnown RBP16.55■□□□□ 0.24
COL9A3-211ENST00000477612 HUWE1Q7Z6Z7 4374 aaKnown RBP16.54■□□□□ 0.24
COL9A3-211ENST00000477612 TEX50A0A1B0GTY4 177 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 H0Y980 276 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 S100GP29377 79 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 PHLDA2Q53GA4 152 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 RAB2BQ8WUD1 216 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 CCDC140Q96MF4 163 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 NDUFA4L2Q9NRX3 87 aa16.54■□□□□ 0.24
COL9A3-211ENST00000477612 LGALS9O00182 355 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 GGCTO75223 188 aaKnown RBP16.53■□□□□ 0.24
COL9A3-211ENST00000477612 KRASP01116 189 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 REG1AP05451 166 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 DEFA4P12838 97 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 TBPP20226 339 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 TMBIM6P55061 237 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 TBC1D26Q86UD7 250 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 GPHB5Q86YW7 130 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 ARRDC1Q8N5I2 433 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 OR1L8Q8NGR8 309 aa16.53■□□□□ 0.24
COL9A3-211ENST00000477612 A8MZ25 164 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 PPP5D1E7EU14 171 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 M0QYG6 137 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 CTDSP2O14595 271 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 TRAPPC2P0DI81 140 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 TRAPPC2BP0DI82 140 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 RPA2P15927 270 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 G6PCP35575 357 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 RND3P61587 244 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 RNASE10Q5GAN6 216 aaKnown RBP16.52■□□□□ 0.24
COL9A3-211ENST00000477612 ADAMTSL5Q6ZMM2 481 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 CLVS1Q8IUQ0 354 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-211ENST00000477612 OR10W1Q8NGF6 305 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 OR2K2Q8NGT1 345 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 EEF1AKMT3Q96AZ1 226 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 ZNF486Q96H40 463 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-211ENST00000477612 CXorf58Q96LI9 332 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 WWC2-AS2Q96NR7 200 aa16.52■□□□□ 0.24
COL9A3-211ENST00000477612 THAP7Q9BT49 309 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-211ENST00000477612 TRBV7-1A0A0A6YYK4 115 aa16.51■□□□□ 0.23
COL9A3-211ENST00000477612 CD74P04233 296 aa16.51■□□□□ 0.23
COL9A3-211ENST00000477612 CD3DP04234 171 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms