RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 DEFA4P12838 97 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 RAB13P51153 203 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 RAP1GDS1P52306 607 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 TPI1P60174 286 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 ERHP84090 104 aaKnown RBP2.24□□□□□ -2.05
VPS50-212ENST00000476413 AKR1C1Q04828 323 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 GUK1Q16774 197 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 Q6ZRN7 208 aaPredicted RBP2.24□□□□□ -2.05
VPS50-212ENST00000476413 ROPN1LQ96C74 230 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 OR8D2Q9GZM6 311 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 XAGE1AQ9HD64 81 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 PAQR5Q9NXK6 330 aaPredicted RBP2.24□□□□□ -2.05
VPS50-212ENST00000476413 NUMA1Q14980 2115 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 TRAV7A0A075B6U4 112 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 LYPLA2O95372 231 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 SRP19P09132 144 aaKnown RBP2.23□□□□□ -2.05
VPS50-212ENST00000476413 OR4D2P58180 307 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 AP1S1P61966 158 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 CAV1Q03135 178 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 RGS21Q2M5E4 152 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 HIST2H3PS2Q5TEC6 136 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 TBC1D19Q8N5T2 526 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 ANKRD7Q92527 254 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 IMP4Q96G21 291 aaKnown RBP2.23□□□□□ -2.05
VPS50-212ENST00000476413 ERMAPQ96PL5 475 aaPredicted RBP2.23□□□□□ -2.05
VPS50-212ENST00000476413 CISHQ9NSE2 258 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 CMTM6Q9NX76 183 aa2.23□□□□□ -2.05
VPS50-212ENST00000476413 KLRC4O43908 158 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 E2F6O75461 281 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 TNNC2P02585 160 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 KCNE1P15382 129 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 CSN1S1P47710 185 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 SPCS3P61009 180 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 RAB14P61106 215 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 LRRC28Q86X40 367 aaPredicted RBP2.22□□□□□ -2.05
VPS50-212ENST00000476413 DYNAPQ8N1N2 210 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 ZNF565Q8N9K5 539 aa2.22□□□□□ -2.05
VPS50-212ENST00000476413 RSL24D1Q9UHA3 163 aaKnown RBP2.22□□□□□ -2.05
VPS50-212ENST00000476413 SORL1Q92673 2214 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 IGHV1-18A0A0C4DH31 117 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 ZNF860A6NHJ4 632 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 PGLYRP1O75594 196 aaPredicted RBP2.21□□□□□ -2.06
VPS50-212ENST00000476413 PSMB8P28062 276 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 S100A7P31151 101 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 ZNF705AQ6ZN79 300 aaPredicted RBP2.21□□□□□ -2.06
VPS50-212ENST00000476413 ZNF625Q96I27 306 aaPredicted RBP2.21□□□□□ -2.06
VPS50-212ENST00000476413 UCK1Q9HA47 277 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 TIMM22Q9Y584 194 aa2.21□□□□□ -2.06
VPS50-212ENST00000476413 A0A0J9YY10 115 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 A0A1B0GV50 99 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 A0A1B0GX78 115 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 SMIM23A6NLE4 172 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 H7C2G1 150 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 CHP2O43745 196 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 HLA-DMBP28068 263 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 EVX1P49640 407 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 SULT1A1P50225 295 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 LSM6P62312 80 aaKnown RBP2.2□□□□□ -2.06
VPS50-212ENST00000476413 SLC38A11Q08AI6 406 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 GLT8D1Q68CQ7 371 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 CCDC42Q96M95 316 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 PPP1R2P1Q96PQ5 205 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 NAT8Q9UHE5 227 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 FUT9Q9Y231 359 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 TIMM9Q9Y5J7 89 aa2.2□□□□□ -2.06
VPS50-212ENST00000476413 CREBL2O60519 120 aaPredicted RBP2.19□□□□□ -2.06
VPS50-212ENST00000476413 C1QCP02747 245 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 RPS17P08708 135 aaKnown RBP2.19□□□□□ -2.06
VPS50-212ENST00000476413 RELAQ04206 551 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 GLO1Q04760 184 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 ACOT6Q3I5F7 207 aaPredicted RBP2.19□□□□□ -2.06
VPS50-212ENST00000476413 SLC7A6Q92536 515 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 FAM96AQ9H5X1 160 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 EFCAB1Q9HAE3 211 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 PKIGQ9Y2B9 76 aa2.19□□□□□ -2.06
VPS50-212ENST00000476413 WRNQ14191 1432 aaPredicted RBP eCLIP2.18□□□□□ -2.06
VPS50-212ENST00000476413 DISP1Q96F81 1524 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 TRAV38-1A0A0B4J264 116 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 CLDN24A6NM45 220 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 TRAPPC2LH3BP13 241 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 KPNA3O00505 521 aaPredicted RBP2.18□□□□□ -2.06
VPS50-212ENST00000476413 NAPSAO96009 420 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 ZNF705DP0CH99 300 aaPredicted RBP2.18□□□□□ -2.06
VPS50-212ENST00000476413 HIST1H1TP22492 207 aaPredicted RBP2.18□□□□□ -2.06
VPS50-212ENST00000476413 TMEM258P61165 79 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 RANP62826 216 aaKnown RBP2.18□□□□□ -2.06
VPS50-212ENST00000476413 RPP25LQ8N5L8 163 aaKnown RBP2.18□□□□□ -2.06
VPS50-212ENST00000476413 CLDN22Q8N7P3 220 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 ACOT12Q8WYK0 555 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 IL36BQ9NZH7 164 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 VPS29Q9UBQ0 182 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 HEATR5AQ86XA9 2040 aa2.18□□□□□ -2.06
VPS50-212ENST00000476413 DOCK10Q96BY6 2186 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 ZFYVE9O95405 1425 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 FN1P02751 2386 aaKnown RBP2.17□□□□□ -2.06
VPS50-212ENST00000476413 TRBV20OR9-2A0A075B6H5 130 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 A0A0D9SEW6 157 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 TCRBP04435 133 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 MSNP26038 577 aaKnown RBP2.17□□□□□ -2.06
VPS50-212ENST00000476413 CDKN2CP42773 168 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms