RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 PCP4P48539 62 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 LIMS2Q7Z4I7 341 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 GATD1Q8NB37 220 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 IGHV1-45A0A0A0MS14 117 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 RNASE4P34096 147 aaKnown RBP11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 RBMY1FQ15415 496 aaKnown RBP11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 MEF2BQ02080 365 aaPredicted RBP11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 RFLNBQ8N5W9 214 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ZNF721Q8TF20 911 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 WDR54Q9H977 334 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 LINC00596Q86U02 117 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 TMEM52Q8NDY8 209 aa11.36□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 TCRBV4S1A1TA0A5B7 111 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 FAM74A7A6NL05 159 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 VSIG8P0DPA2 414 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 PAX2Q02962 417 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 DNAJC4Q9NNZ3 241 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ABCA3Q99758 1704 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ODAMA1E959 279 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 HOXA6P31267 233 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ST6GALNAC3Q8NDV1 305 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 WFIKKN1Q96NZ8 548 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 IDI2-AS1Q9NZ38 188 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 APOMO95445 188 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 PRB4P10163 310 aaPredicted RBP11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 RNF133Q8WVZ7 376 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 CLEC7AQ9BXN2 247 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 C1QL1O75973 258 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 FAM71F2Q6NXP2 309 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 KLF14Q8TD94 323 aaPredicted RBP11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 A0A087WX48 190 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 A0A1W2PQD3 144 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 M0QZK8 103 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 OGG1O15527 345 aa11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 GGCTO75223 188 aaKnown RBP11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 RPL34P49207 117 aaKnown RBP11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 DLX4Q92988 240 aaPredicted RBP11.35□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 SMIM13P0DJ93 91 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 LINC00299Q6ZSB3 139 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 KCNK7Q9Y2U2 307 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 CRYBB3P26998 211 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 GPR183P32249 361 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 TCF24Q7RTU0 167 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ST6GALNAC2Q9UJ37 374 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 SYNGR3O43761 229 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 SLC22A18ASQ8N1D0 253 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 CENPVL1A0A0U1RR11 272 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 DNM1P46Q6ZS02 220 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 ZNF430Q9H8G1 570 aaPredicted RBP11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 H3BMM0 161 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 FGF12P61328 243 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 MSRB3Q8IXL7 192 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 OR51G1Q8NGK1 321 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 UBE2WQ96B02 151 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 SPSB2Q99619 263 aa11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 SSBP3Q9BWW4 388 aaPredicted RBP11.34□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 CFDP00746 253 aaPredicted RBP11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 IGKV1D-33P01593 117 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 IGKV1-33P01594 117 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 LY6DQ14210 128 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 LDLRAD2Q5SZI1 272 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 MARS2Q96GW9 593 aaKnown RBP11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 MARVELD1Q9BSK0 173 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 DOPEY1Q5JWR5 2465 aa11.33□□□□□ -0.59
NPHP3-ACAD11-201ENST00000471702 FGFRL1Q8N441 504 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 TMEM126AQ9H061 195 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 CD24P25063 80 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 ICAM4Q14773 271 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SRSF7Q16629 238 aaKnown RBP eCLIP11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 CLEC19AQ6UXS0 136 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PSG9Q00887 426 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 FAM27E3Q08E93 113 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SFTA2Q6UW10 78 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PARLQ9H300 379 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 KLHDC2Q9Y2U9 406 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 LOC390937A0A1W2PQ73 354 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 HMSDA8MTL9 139 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 DMKNQ6E0U4 476 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 C8orf46Q8TAG6 207 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 NPIPB3Q92617 1050 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 LRRC3BQ96PB8 259 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SCGB3A1Q96QR1 104 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PEMTQ9UBM1 199 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 A0A0U1RRA0 63 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SNAI2O43623 268 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SP9P0CG40 484 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 KLK2P20151 261 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 ZP4Q12836 540 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 WDR82Q6UXN9 313 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 KLK13Q9UKR3 277 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 TRAV8-2A0A0B4J237 113 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 HOXD4P09016 255 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 GLIPR1P48060 266 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 LINC00158P58513 81 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 MDS2Q8NDY4 140 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 OR51M1Q9H341 326 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 CDC42EP3Q9UKI2 254 aa11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 FOXA2Q9Y261 457 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 NPIPB11E5RHQ5 1161 aa11.32□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 COX19Q49B96 90 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms