RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CDS2O95674 445 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 RPLP1P05386 114 aaKnown RBP9.34□□□□□ -0.91
VPS13D-204ENST00000469054 OR9G9P0C7N8 305 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 BTCP35070 178 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 RPL27AP46776 148 aaKnown RBP9.34□□□□□ -0.91
VPS13D-204ENST00000469054 DHODHQ02127 395 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 C2orf68Q2NKX9 166 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 NSUN5P1Q3KNT7 163 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 KHDC1LQ5JSQ8 128 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 ASPHD1Q5U4P2 390 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 LCNL1Q6ZST4 164 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 TMED4Q7Z7H5 227 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 TSC22D3Q99576 134 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 SPIN2AQ99865 258 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 SPIN2BQ9BPZ2 258 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 TMEM222Q9H0R3 208 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 KLK15Q9H2R5 256 aa9.34□□□□□ -0.91
VPS13D-204ENST00000469054 A0A1W2PRX2 142 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 SNAPC5O75971 98 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 NDUFB6O95139 128 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 APELAP0DMC3 54 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 PF4V1P10720 104 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 MYOD1P15172 320 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 RAB9AP51151 201 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 RPL23AP62750 156 aaKnown RBP9.33□□□□□ -0.92
VPS13D-204ENST00000469054 SUPT4H1P63272 117 aaKnown RBP9.33□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM128Q5BJH2 165 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM65Q6PI78 240 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 H2BFWTQ7Z2G1 175 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 OR5T1Q8NG75 326 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM56Q96MV1 263 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 FYTTD1Q96QD9 318 aaKnown RBP9.33□□□□□ -0.92
VPS13D-204ENST00000469054 COMMD5Q9GZQ3 224 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 PRNDQ9UKY0 176 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 NSG2Q9Y328 171 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM56-RWDD3S4R434 201 aa9.33□□□□□ -0.92
VPS13D-204ENST00000469054 PLXNB1O43157 2135 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 A0A1B0GW64 132 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 HMX3A6NHT5 357 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 TEX22C9J3V5 150 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 UPK1BO75841 260 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 IGKV1-5P01602 117 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 P0C879 139 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 ANXA3P12429 323 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 AKR1C2P52895 323 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 OR2B8PP59922 312 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 KIAA0141Q14154 515 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM187Q14656 261 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 PRR31Q5SQ13 230 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 C18orf65Q6ZTR6 163 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 SLC25A42Q86VD7 318 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 ZNF695Q8IW36 515 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 SELENOHQ8IZQ5 122 aaKnown RBP9.32□□□□□ -0.92
VPS13D-204ENST00000469054 CENPSQ8N2Z9 138 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 TTC9CQ8N5M4 171 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 OR4A16Q8NH70 328 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 LHFPL5Q8TAF8 219 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 MYOZ3Q8TDC0 251 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 CASTOR1Q8WTX7 329 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 RBPMSQ93062 196 aaKnown RBP9.32□□□□□ -0.92
VPS13D-204ENST00000469054 RRNAD1Q96FB5 475 aaKnown RBP9.32□□□□□ -0.92
VPS13D-204ENST00000469054 SLA2Q9H6Q3 261 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 ZNF355PQ9NSJ1 428 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 FKBP11Q9NYL4 201 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 FLVCR2Q9UPI3 526 aa9.32□□□□□ -0.92
VPS13D-204ENST00000469054 TEX50A0A1B0GTY4 177 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 CGB1A6NKQ9 187 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 C15orf61A6NNL5 157 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 H3BUA1 57 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 CDX1P47902 265 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-204ENST00000469054 IFITM3Q01628 133 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 OR4F17Q8NGA8 305 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 OR1L8Q8NGR8 309 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 FAM110DQ8TAY7 271 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-204ENST00000469054 IL22RA2Q969J5 263 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 MS4A10Q96PG2 267 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 OR4F4Q96R69 305 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 SRSF8Q9BRL6 282 aaKnown RBP9.31□□□□□ -0.92
VPS13D-204ENST00000469054 QTRT1Q9BXR0 403 aaKnown RBP9.31□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM14BQ9NUH8 114 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 TBC1D24Q9ULP9 559 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 OR51B2Q9Y5P1 312 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 TENM1Q9UKZ4 2725 aa9.31□□□□□ -0.92
VPS13D-204ENST00000469054 TNCP24821 2201 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 A0A0B4J293 547 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 A0A0G2JRQ6 117 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 DBX1A6NMT0 343 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 NPIPB5A8MRT5 1133 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 NUDT19A8MXV4 375 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 RBMXL2O75526 392 aaKnown RBP9.3□□□□□ -0.92
VPS13D-204ENST00000469054 BRI3O95415 125 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 SFT2D2O95562 160 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 TSPAN15O95858 294 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 TRAPPC2P0DI81 140 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 TRAPPC2BP0DI82 140 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 VAMP1P23763 118 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 SLC6A1P30531 599 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 UBE2MP61081 183 aaKnown RBP9.3□□□□□ -0.92
VPS13D-204ENST00000469054 SRPXP78539 464 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 ASAH1Q13510 395 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms