RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 HPCAP84074 193 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 HOXC5Q00444 222 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 ST3GAL3Q11203 375 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 CALCOCO2Q13137 446 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 LAGE3Q14657 143 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 PSG3Q16557 428 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 C5orf64Q2M2E5 130 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 ATAD3CQ5T2N8 411 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 FAM162BQ5T6X4 162 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 GPR107Q5VW38 600 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 C22orf42Q6IC83 251 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 OR8G2PQ6IF36 304 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 GPRIN3Q6ZVF9 776 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 DHRSXQ8N5I4 330 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 OR2T33Q8NG76 320 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 FAM76AQ8TAV0 307 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 PLPPR1Q8TBJ4 325 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 LEAP2Q969E1 77 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 CCDC124Q96CT7 223 aaKnown RBP3.07□□□□□ -1.92
HMGB1-207ENST00000468384 FCRL1Q96LA6 429 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 RBP7Q96R05 134 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 CCDC28BQ9BUN5 200 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 RTL8AQ9BWD3 113 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 OR51M1Q9H341 326 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 RPS6KB2Q9UBS0 482 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 SLC22A13Q9Y226 551 aa3.07□□□□□ -1.92
HMGB1-207ENST00000468384 AK6Q9Y3D8 172 aaKnown RBP3.07□□□□□ -1.92
HMGB1-207ENST00000468384 A0A1B0GWA3 101 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 A8MWP6 167 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 F5H5K5 113 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 SMLR1H3BR10 107 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 RFXANKO14593 260 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 IGLV3-1P01715 115 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 C8orf88P0DMB2 117 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 PMCHP20382 165 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 NFYBP25208 207 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 PSMB6P28072 239 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 MAGEA3P43357 314 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 ALDH3B2P48448 385 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 DAP3P51398 398 aaKnown RBP3.06□□□□□ -1.92
HMGB1-207ENST00000468384 UGT2B15P54855 530 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 PKNOX1P55347 436 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 CMC4P56277 68 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-207ENST00000468384 TMEM50BP56557 158 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 RIPPLY1Q0D2K3 151 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 MAPRE2Q15555 327 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 VAMP3Q15836 100 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 GLYATL3Q5SZD4 288 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 REEP3Q6NUK4 255 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 ULK3Q6PHR2 472 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 HAGHLQ6PII5 290 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-207ENST00000468384 C4orf22Q6V702 233 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 Q6ZSR3 168 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 FAM220AQ7Z4H9 259 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 CMTM1Q8IZ96 169 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 C15orf54Q8N8G6 183 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 OR10X1Q8NGY0 326 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 USMG5Q96IX5 58 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 OPALINQ96PE5 141 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 LITAFQ99732 161 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 NAPGQ99747 312 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-207ENST00000468384 OCR1Q9BZK8 76 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 NKIRAS1Q9NYS0 192 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 DCDC2Q9UHG0 476 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 PCTPQ9UKL6 214 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 SPATA2Q9UM82 520 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 SLC7A11Q9UPY5 501 aa3.06□□□□□ -1.92
HMGB1-207ENST00000468384 FCN1O00602 326 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 SNAI2O43623 268 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 ATP5HO75947 161 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 CCNB2O95067 398 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 SPRP35270 261 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 MAGEA6P43360 314 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 CDC34P49427 236 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 RIDAP52758 137 aaKnown RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 UBE2MP61081 183 aaKnown RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 CYLC2Q14093 348 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 C17orf58Q2M2W7 97 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 ZFP69Q49AA0 526 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 SPANXN3Q5MJ09 141 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 TNFAIP8L2Q6P589 184 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 GPHB5Q86YW7 130 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 INO80EQ8NBZ0 244 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 OR5T1Q8NG75 326 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 RASSF5Q8WWW0 418 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 MARC2Q969Z3 335 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 SLC35G5Q96KT7 338 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 CLCC1Q96S66 551 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 ATP5SQ99766 215 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 NAT9Q9BTE0 207 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 MAP1LC3CQ9BXW4 147 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 PARD6GQ9BYG4 376 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 FGF23Q9GZV9 251 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-207ENST00000468384 PSG11Q9UQ72 335 aa3.05□□□□□ -1.92
HMGB1-207ENST00000468384 FLGP20930 4061 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 IGLV4-3A0A075B6K6 122 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 IGHV3OR16-12A0A075B7B8 117 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 TRAV9-2A0A087WT02 112 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 TRGV10A0A0A0MS01 117 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms