RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 BORCS7-ASMTA0A0B4J1R7 106 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 IGHV2-70DA0A0C4DH43 119 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 MSGN1A6NI15 193 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 SCGB1D2O95969 90 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 IGHV4-38-2P0DP08 117 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 CEACAM3P40198 252 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 COMPP49747 757 aaPredicted RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 GNG10P50151 68 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 RAB14P61106 215 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 RPP30P78346 268 aaKnown RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 RELBQ01201 579 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 HABP2Q14520 560 aaPredicted RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 ATP6V1FQ16864 119 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 TGIF2LXQ8IUE1 241 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 OR8H3Q8N146 312 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 LEAP2Q969E1 77 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 FLYWCH2Q96CP2 140 aaKnown RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 JMJD8Q96S16 334 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 ZNF471Q9BX82 626 aaPredicted RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 PARD6GQ9BYG4 376 aaPredicted RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 NUP50Q9UKX7 468 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 PRNDQ9UKY0 176 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 FOXA2Q9Y261 457 aaPredicted RBP9.5□□□□□ -0.89
USP54-209ENST00000464635 WASHC3Q9Y3C0 194 aa9.5□□□□□ -0.89
USP54-209ENST00000464635 MEX3AA1L020 520 aaKnown RBP9.49□□□□□ -0.89
USP54-209ENST00000464635 LINC00862A6NCI5 91 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 DNAJC9-AS1A6NH13 148 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 ODF3BA8MYP8 253 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 LEUTXA8MZ59 168 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 DFFBO76075 338 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 SULT1A1P50225 295 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 PAX8Q06710 450 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 UTF1Q5T230 341 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 TMEM14EPQ6UXP3 125 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 STX12Q86Y82 276 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 OR4P4Q8NGL7 312 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 OR5B3Q8NH48 314 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 OR4A16Q8NH70 328 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 TMEM14BQ9NUH8 114 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 DPM3Q9P2X0 92 aa9.49□□□□□ -0.89
USP54-209ENST00000464635 TBL2Q9Y4P3 447 aaKnown RBP9.49□□□□□ -0.89
USP54-209ENST00000464635 TRAV40A0A0B4J280 105 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 MDFIC2A0A1B0GVS7 189 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 A0A1W2PPE3 182 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 C15orf61A6NNL5 157 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 CRYZL1O95825 349 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 CFDP00746 253 aaPredicted RBP9.48□□□□□ -0.89
USP54-209ENST00000464635 OR8U8P0C7N1 319 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 SEC11BP0C7V7 166 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 HTR1DP28221 377 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 CD1BP29016 333 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 HSPE1P61604 102 aaKnown RBP9.48□□□□□ -0.89
USP54-209ENST00000464635 HBG1P69891 147 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 HBG2P69892 147 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 EWSR1Q01844 656 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP54-209ENST00000464635 AWAT1Q58HT5 328 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 CCDC144NLQ6NUI1 221 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 TEX45Q8NA69 505 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 TAF15Q92804 592 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP54-209ENST00000464635 GINS3Q9BRX5 216 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 SIRPDQ9H106 197 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 ZC4H2Q9NQZ6 224 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 TMEM140Q9NV12 185 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 PSENENQ9NZ42 101 aa9.48□□□□□ -0.89
USP54-209ENST00000464635 UPK2O00526 184 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 SSSCA1O60232 199 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 SOX15O60248 233 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 SPDEFO95238 335 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 TMEM50AO95807 157 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 IGHV3-7P01780 117 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 MAS1LP35410 378 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 RAB5CP51148 216 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 UBE2E1P51965 193 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 OR4A47Q6IF82 309 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 C3orf56Q8N813 242 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 TMEM167AQ8TBQ9 72 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 DTD1Q8TEA8 209 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 RNF141Q8WVD5 230 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 GGACTQ9BVM4 153 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 MRPL20Q9BYC9 149 aaKnown RBP9.47□□□□□ -0.89
USP54-209ENST00000464635 FBXL17Q9UF56 701 aa9.47□□□□□ -0.89
USP54-209ENST00000464635 IGHV1-3A0A0C4DH29 117 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 RPS10-NUDT3A0A1W2PQS6 291 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 FAM24AA6NFZ4 105 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 NUDT19A8MXV4 375 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 FNDC10F2Z333 226 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 SHOXO15266 292 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 FGF16O43320 207 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 KBTBD11O94819 623 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 ARG1P05089 322 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 OR9G9P0C7N8 305 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 HTR2BP41595 481 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 CAV2P51636 162 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 LINC00205P59089 165 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 ARF6P62330 175 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 NHLH2Q02577 135 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 OR2B11Q5JQS5 317 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 HCP5Q6MZN7 132 aa9.46□□□□□ -0.9
USP54-209ENST00000464635 RBMS3Q6XE24 437 aaKnown RBP9.46□□□□□ -0.9
USP54-209ENST00000464635 OR1S2Q8NGQ3 325 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms