RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 BET1LQ9NYM9 111 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 CDC42EP3Q9UKI2 254 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 IGHV2OR16-5A0A0B4J2B6 119 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 GJE1A6NN92 205 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 A8MXE2 369 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 HBZP02008 142 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 OR10J4P0C629 311 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 LTBRP36941 435 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 STUMQ69YW2 141 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 EBLN2Q6P2I7 272 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 Q6ZR03 302 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 MIR17HGQ75NE6 70 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 SCCPDHQ8NBX0 429 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 BORCS7Q96B45 105 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 C1orf159Q96HA4 380 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 SSBP4Q9BWG4 385 aaPredicted RBP9.72□□□□□ -0.85
CPSF3-202ENST00000460593 ITGB1BP1O14713 200 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 FCGR3BO75015 233 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 CXorf1O96002 111 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 PSG1P11464 419 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 SSPNQ14714 243 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 MOB3BQ86TA1 216 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 FAM216AQ8WUB2 273 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 POM121L2Q96KW2 1035 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 IMMP1LQ96LU5 166 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 TET2Q6N021 2002 aaPredicted RBP9.71□□□□□ -0.85
CPSF3-202ENST00000460593 TNCP24821 2201 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 ARFGEF3Q5TH69 2177 aa9.71□□□□□ -0.85
CPSF3-202ENST00000460593 RNF212BA8MTL3 300 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 NPIPB11E5RHQ5 1161 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 GNG4P50150 75 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 EFNB3Q15768 340 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 LINC00479Q96M42 142 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 SLC35D1Q9NTN3 355 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 CACNA1EQ15878 2313 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 TOMM40O96008 361 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 P04436 131 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 CCL4P13236 92 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 GABRA2P47869 451 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 AARDQ4LEZ3 155 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 MPV17L2Q567V2 206 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 RIPPLY2Q5TAB7 128 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 GALMQ96C23 342 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 GNB1LQ9BYB4 327 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 C12orf49Q9H741 205 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 CLCF1Q9UBD9 225 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 METRNQ9UJH8 293 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 PI4KAP42356 2102 aa9.71□□□□□ -0.86
CPSF3-202ENST00000460593 KMT2EQ8IZD2 1858 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 SRD5A2P31213 254 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 CLDN18P56856 261 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 PSG5Q15238 335 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 TCTEX1D1Q8N7M0 179 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 Q8TCH9 128 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 SH2D2AQ9NP31 389 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 TECRQ9NZ01 308 aaKnown RBP9.7□□□□□ -0.86
CPSF3-202ENST00000460593 OR2T8A6NH00 312 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 K7EP13 123 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 TNFSF4P23510 183 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 RPL8P62917 257 aaKnown RBP9.7□□□□□ -0.86
CPSF3-202ENST00000460593 DCAF12Q5T6F0 453 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 PRAMEF5Q5TYX0 476 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 PRAMEF6Q5VXH4 476 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 RNASEKQ6P5S7 137 aaKnown RBP9.7□□□□□ -0.86
CPSF3-202ENST00000460593 STPG3Q8N7X2 389 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF439Q8NDP4 499 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 OR4F17Q8NGA8 305 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 HINT2Q9BX68 163 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 KCNIP1Q9NZI2 227 aa9.7□□□□□ -0.86
CPSF3-202ENST00000460593 PIGBOS1A0A0B4J2F0 54 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 IGHV2-70DA0A0C4DH43 119 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 HELTA6NFD8 242 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 J3QT63 122 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 RAB29O14966 203 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 CELA3BP08861 270 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 CX3CL1P78423 397 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 CATR1Q13166 79 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 SPINK14Q6IE38 97 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 RAB1CQ92928 201 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 KLF7O75840 302 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 USF1P22415 310 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 OPRK1P41145 380 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 SELENOVP59797 346 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 SLC24A4Q8NFF2 622 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 NINJ1Q92982 152 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 HES7Q9BYE0 225 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 MBNL3Q9NUK0 354 aaKnown RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 TIMM8BQ9Y5J9 83 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 HEATR1Q9H583 2144 aaKnown RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 IGHV2-26A0A0B4J1V2 119 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 IGLC7A0M8Q6 106 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 H0Y8G0 127 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 APCSP02743 223 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 IGFBP2P18065 325 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 EIF4EBP1Q13541 118 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-202ENST00000460593 UTF1Q5T230 341 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 GDF5OSQ5U4N7 250 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 LINC00173Q6ZV60 143 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 KLHDC1Q8N7A1 406 aa9.69□□□□□ -0.86
CPSF3-202ENST00000460593 ZNF596Q8TC21 504 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms