RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 OR4A47Q6IF82 309 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 ZNF703Q9H7S9 590 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 F11RQ9Y624 299 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 S4R3C0 116 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 DNAL4O96015 105 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 PKIBQ9C010 78 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 RBFOX2O43251 390 aaKnown RBP eCLIP10.29□□□□□ -0.762e-7■■■■■ 40.6
CCDC88A-207ENST00000436346 SLC25A47Q6Q0C1 308 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 AQP3Q92482 292 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 THSD7BQ9C0I4 1608 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 TMEM218A2RU14 115 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 IFITM10A6NMD0 228 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 GTSCR1Q86UQ5 136 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 OR5P3Q8WZ94 311 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 GOLT1AQ6ZVE7 132 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 FAM206AQ9NX38 181 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 ACP7Q6ZNF0 438 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 LINC00305Q7Z4B0 112 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 OR51G1Q8NGK1 321 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 MARVELD3Q96A59 401 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 AKIRIN1Q9H9L7 192 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 DLL3Q9NYJ7 618 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 KLK2P20151 261 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 LIMS1P48059 325 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 FAM181AQ8N9Y4 354 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 LHFPL5Q8TAF8 219 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A1W2PP11 408 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHMP01871 453 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 HOXB1P14653 301 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 MEIG1Q5JSS6 88 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 SAXO1Q8IYX7 474 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 RPS11P62280 158 aaKnown RBP eCLIP10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 ARPC1AQ92747 370 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 RPLP1P05386 114 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 CELA3AP09093 270 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 OR4X2Q8NGF9 303 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 C9JCJ5 164 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 RIPPLY2Q5TAB7 128 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 COX6CP09669 75 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 TMEM186Q96B77 213 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 TMEM70Q9BUB7 260 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 EXPH5Q8NEV8 1989 aa10.28□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A0G2JLM5 398 aa10.27□□□□□ -0.76
CCDC88A-207ENST00000436346 RFPL3SP0C7P2 107 aa10.27□□□□□ -0.76
CCDC88A-207ENST00000436346 SPATA45Q537H7 98 aa10.27□□□□□ -0.76
CCDC88A-207ENST00000436346 TIMM23BQ5SRD1 257 aa10.27□□□□□ -0.76
CCDC88A-207ENST00000436346 C4orf51C9J302 202 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 SH3BGRL3Q9H299 93 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 C7orf69Q9H7B7 122 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 OR5AC2Q9NZP5 309 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 PGLYRP1O75594 196 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 HSPB1P04792 205 aaKnown RBP10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 CELA3BP08861 270 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 LY6DQ14210 128 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF818PQ6ZRF7 136 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 SIGLEC12Q96PQ1 595 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 MRPL13Q9BYD1 178 aaKnown RBP10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF729A6NN14 1252 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 GLIPR1P48060 266 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 PPP1R32Q7Z5V6 425 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 FGFRL1Q8N441 504 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 HKR1P10072 659 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 OR51M1Q9H341 326 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 SDF2L1Q9HCN8 221 aa10.27□□□□□ -0.77
CCDC88A-207ENST00000436346 TGFAP01135 160 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 SIGIRRQ6IA17 410 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 CHCHD2Q9Y6H1 151 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 CECR9P0C854 216 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 MALP21145 153 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 MIXL1Q9H2W2 232 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 ADAMTS20P59510 1910 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TRGC1P0CF51 173 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF25P17030 456 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 NPBWR2P48146 333 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 UBE2V2Q15819 145 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TRBV5-3A0A0A0MS03 114 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 FABP2P12104 132 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 GPR183P32249 361 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 UNC119Q13432 240 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 BEX4Q9NWD9 120 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 IGHV2OR16-5A0A0B4J2B6 119 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 C7orf71A4D174 169 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 MYO9AB2RTY4 2548 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 FUT5Q11128 374 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 LBHQ53QV2 105 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 OR4D5Q8NGN0 318 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TRAF4Q9BUZ4 470 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TMEM106BQ9NUM4 274 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 F12P00748 615 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 OTX1P32242 354 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 JOSD1Q15040 202 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 HLA-DQA1P01909 254 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 CDX1P47902 265 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TMEM91Q6ZNR0 172 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 AQP10Q96PS8 301 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 TNFSF18Q9UNG2 199 aa10.26□□□□□ -0.77
CCDC88A-207ENST00000436346 PRSS23O95084 383 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 RECKO95980 971 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF883P0CG24 379 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 SELENOHQ8IZQ5 122 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms