RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 EGLN1Q9GZT9 426 aa6.9□□□□□ -1.3
CD44-208ENST00000428726 DYNLRB1Q9NP97 96 aa6.9□□□□□ -1.3
CD44-208ENST00000428726 COX7A1P24310 79 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 GPX4P36969 197 aaPredicted RBP6.9□□□□□ -1.31
CD44-208ENST00000428726 FAM3BP58499 235 aaPredicted RBP6.9□□□□□ -1.31
CD44-208ENST00000428726 SSTP61278 116 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 MBNL2Q5VZF2 373 aaKnown RBP6.9□□□□□ -1.31
CD44-208ENST00000428726 SPATA31B1PQ5VZV4 182 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 FAM169BQ8N8A8 192 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 OR4F5Q8NH21 305 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 OR4A16Q8NH70 328 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 RITA1Q96K30 269 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 OR4F4Q96R69 305 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 LAMP3Q9UQV4 416 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 IGSF10Q6WRI0 2623 aa6.9□□□□□ -1.31
CD44-208ENST00000428726 MAP1LC3B2A6NCE7 125 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 LRRC30A6NM36 301 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 SRRM4A7MD48 611 aaKnown RBP6.89□□□□□ -1.31
CD44-208ENST00000428726 FAM90A26D6RGX4 464 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 E7EUB6 86 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 C16orf97H3BN30 126 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 PAGE4O60829 102 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 CHRNA7P36544 502 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 TLE4Q04727 773 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 CLDND2Q8NHS1 167 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 MAP1LC3BQ9GZQ8 125 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 KIAA1456Q9P272 454 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 C15orf65H3BRN8 121 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 CCL21O00585 134 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 NDUFS7O75251 213 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 FCN3O75636 299 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 HBE1P02100 147 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 FOLR2P14207 255 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 CHRNB4P30926 498 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 SELENOVP59797 346 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 CATR1Q13166 79 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 MSMO1Q15800 293 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 FAM216AQ8WUB2 273 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 S1PR3Q99500 378 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 ASCL2Q99929 193 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 HIPK2Q9H2X6 1198 aa6.89□□□□□ -1.31
CD44-208ENST00000428726 MBD3L4A6NDZ8 208 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 MBD3L3A6NE82 208 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 MBD3L5A6NJ08 208 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 SRRM5B3KS81 715 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 THBDP07204 575 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 HOXA5P20719 270 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 DUTP33316 252 aaKnown RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 GNB1P62873 340 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 HBG1P69891 147 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 HBG2P69892 147 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 MRPS11P82912 194 aaKnown RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 ZNF600Q6ZNG1 722 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 OR10P1Q8NGE3 313 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 MBD3L2Q8NHZ7 208 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 TAF15Q92804 592 aaKnown RBP eCLIP6.88□□□□□ -1.31
CD44-208ENST00000428726 LURAP1Q96LR2 239 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 SMIM7Q9BQ49 75 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 GSX1Q9H4S2 264 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 SAP30LQ9HAJ7 183 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 A0A1B0GWJ7 208 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 FOXH1O75593 365 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 OR10J4P0C629 311 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 IRF2P14316 349 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 CDX1P47902 265 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 ATP5G3P48201 142 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 THBS3P49746 956 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 ADIPOQQ15848 244 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 TIMM23BQ5SRD1 257 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 IGFL3Q6UXB1 125 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 OR10G4Q8NGN3 311 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 OR10G9Q8NGN4 311 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 OR10G7Q8NGN6 311 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 PACRGQ96M98 296 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 PCGF1Q9BSM1 259 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 LPAR2Q9HBW0 351 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.88□□□□□ -1.31
CD44-208ENST00000428726 TMEM140Q9NV12 185 aa6.88□□□□□ -1.31
CD44-208ENST00000428726 GLRXP35754 106 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 RPL31P62899 125 aaKnown RBP6.87□□□□□ -1.31
CD44-208ENST00000428726 SLC35B1P78383 322 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 TBR1Q16650 682 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 C17orf58Q2M2W7 97 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 HCP5Q6MZN7 132 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 TRAT1Q6PIZ9 186 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 C1orf87Q8N0U7 546 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 TCTEX1D1Q8N7M0 179 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 ACY3Q96HD9 319 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 TPSG1Q9NRR2 321 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 RNF7Q9UBF6 113 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 SELENOKQ9Y6D0 94 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 CNTFRP26992 372 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 G0S2P27469 103 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 PAX5Q02548 391 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 SP5Q6BEB4 398 aaPredicted RBP6.87□□□□□ -1.31
CD44-208ENST00000428726 TCF23Q7RTU1 214 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 NHLRC2Q8NBF2 726 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 FAM57AQ8TBR7 257 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 RAB24Q969Q5 203 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 PSMG3Q9BT73 122 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms