RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 PRXQ9BXM0 1461 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 MIA3Q5JRA6 1907 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 CUL7Q14999 1698 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 ZMYM4Q5VZL5 1548 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 ARAP3Q8WWN8 1544 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 ABCA8O94911 1581 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 PLCH2O75038 1416 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 A0A087WUJ7 227 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 A0A0B4J2C4 111 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 A0A1B0GV50 99 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 LINC00862A6NCI5 91 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 ZNF729A6NN14 1252 aaPredicted RBP2.12□□□□□ -2.07
USP40-204ENST00000427947 IGLL5B9A064 214 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 DISC1C4P0D8 188 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 GSTZ1O43708 216 aaPredicted RBP2.12□□□□□ -2.07
USP40-204ENST00000427947 NOS1APO75052 506 aaPredicted RBP2.12□□□□□ -2.07
USP40-204ENST00000427947 PTHLHP12272 177 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 CRABP2P29373 138 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 OR10J1P30954 320 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 MPV17P39210 176 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 LINC00313P59037 77 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 FABP9Q0Z7S8 132 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 APOFQ13790 326 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 MMDQ15546 238 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 FAM201AQ5SY85 155 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 FAM104BQ5XKR9 115 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 SBSNQ6UWP8 590 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 C1orf174Q8IYL3 243 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 SPANXA2-OT1Q8N9U9 137 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 LHFPL5Q8TAF8 219 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 NEK7Q8TDX7 302 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 CMBLQ96DG6 245 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 C1orf50Q9BV19 199 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 DCSTAMPQ9H295 470 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 CMTM6Q9NX76 183 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 ZNF586Q9NXT0 402 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 CARHSP1Q9Y2V2 147 aaKnown RBP2.12□□□□□ -2.07
USP40-204ENST00000427947 PHLDA3Q9Y5J5 127 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 TRAPPC1Q9Y5R8 145 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 TEX14Q8IWB6 1497 aa2.12□□□□□ -2.07
USP40-204ENST00000427947 CEP170BQ9Y4F5 1589 aaPredicted RBP2.11□□□□□ -2.07
USP40-204ENST00000427947 CCDC144AA2RUR9 1427 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 IGKV1-12A0A0C4DH73 117 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 IGKV1D-33P01593 117 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 IGKV1-33P01594 117 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 IGKV1D-12P01611 117 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 OPN1SWP03999 348 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 IGLV7-43P04211 117 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 SERPINA7P05543 415 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 OR5G3P0C626 314 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 CDK2P24941 298 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 RAB14P61106 215 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 PSME3P61289 254 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 ACOT6Q3I5F7 207 aaPredicted RBP2.11□□□□□ -2.07
USP40-204ENST00000427947 ZCWPW2Q504Y3 356 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 TBPL2Q6SJ96 375 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 C5orf46Q6UWT4 87 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 ADM2Q7Z4H4 148 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 TMED4Q7Z7H5 227 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 DEFB125Q8N687 156 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 LY6G5BQ8NDX9 201 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 FAM172AQ8WUF8 416 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 YIPF5Q969M3 257 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 SFRP2Q96HF1 295 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 OR52E6Q96RD3 313 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 TRABDQ9H4I3 376 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 NMNAT1Q9HAN9 279 aaPredicted RBP2.11□□□□□ -2.07
USP40-204ENST00000427947 ZNF286AQ9HBT8 521 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 OPTCQ9UBM4 332 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 ZNF391Q9UJN7 358 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 ANAPC10Q9UM13 185 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 CHD2O14647 1828 aaKnown RBP2.11□□□□□ -2.07
USP40-204ENST00000427947 ACANP16112 2415 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 PLXNA3P51805 1871 aa2.11□□□□□ -2.07
USP40-204ENST00000427947 TTC37Q6PGP7 1564 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 EEA1Q15075 1411 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 PQLC2LA1A4F0 135 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 OR6C6A6NF89 314 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 ZNF98A6NK75 572 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 A8MWP4 228 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 H0YJX3 145 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 BHLHE40O14503 412 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 MT-CO2P00403 227 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 PDYNP01213 254 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 LHBP01229 141 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 IGKV4-1P06312 121 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 CST2P09228 141 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 INAFM2P0DMQ5 153 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 CGB3P0DN86 165 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 CGB7P0DN87 165 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 FGF6P10767 208 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 CCL1P22362 96 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 GZMMP51124 257 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 DAPP51397 102 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 PSG4Q00888 419 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 KRR1Q13601 381 aaKnown RBP2.1□□□□□ -2.07
USP40-204ENST00000427947 ARHGAP11BQ3KRB8 267 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 TRIQKQ629K1 86 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 KRTAP5-2Q701N4 177 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 ANKRD29Q8N6D5 301 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms