RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 RAB4BP61018 213 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 CT45A1Q5HYN5 189 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 ASPHD1Q5U4P2 390 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 RPRMLQ8N4K4 120 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 CISD2Q8N5K1 135 aaKnown RBP8.11□□□□□ -1.11
SS18-203ENST00000415083 OR10G8Q8NGN5 311 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 CT45A3Q8NHU0 189 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 ACY3Q96HD9 319 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 TIMM8AO60220 97 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 SSMEM1Q8WWF3 244 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 SNRNP40Q96DI7 357 aaKnown RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 STARD4Q96DR4 205 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 IMMP2LQ96T52 175 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 ZNF71Q9NQZ8 489 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 KCNIP2Q9NS61 270 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 POLR3KQ9Y2Y1 108 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 ZNF320A2RRD8 509 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 GRIFINA4D1Z8 144 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 F2RL2O00254 374 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 LHBP01229 141 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 LINC00869P0C866 280 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 ACOT6Q3I5F7 207 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 SDSLQ96GA7 329 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 SFRP2Q96HF1 295 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 FER1L6-AS2Q96M78 137 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 CIB3Q96Q77 187 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 TMEM140Q9NV12 185 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 M0R1X1 148 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 SLC17A3O00476 420 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 HPRT1P00492 218 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 IL6RP08887 468 aaPredicted RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 TIMP3P35625 211 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 RPL29P47914 159 aaKnown RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 MRPL49Q13405 166 aaKnown RBP8.1□□□□□ -1.11
SS18-203ENST00000415083 TCTEX1D1Q8N7M0 179 aa8.1□□□□□ -1.11
SS18-203ENST00000415083 A6NNC1 897 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 ZNF705FA8MVS1 300 aaPredicted RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 ZNF705DP0CH99 300 aaPredicted RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 ZNF705BP0CI00 300 aaPredicted RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 GPR12P47775 334 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 SPCS3P61009 180 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 NUTF2P61970 127 aaKnown RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 FOXL1Q12952 345 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 EFNB3Q15768 340 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 OR2Z1Q8NG97 314 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 NINJ1Q92982 152 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 PLSCR4Q9NRQ2 329 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 TP53TG5Q9Y2B4 290 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 SRRM4A7MD48 611 aaKnown RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 CNN1P51911 297 aaKnown RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 MLANAQ16655 118 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 TMEM164Q5U3C3 297 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 ZNF439Q8NDP4 499 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 TMEM18Q96B42 140 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 NOL4LQ96MY1 436 aaPredicted RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 NEU1Q99519 415 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 DCAF16Q9NXF7 216 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 TCF19Q9Y242 345 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 SLC25A15Q9Y619 301 aa8.09□□□□□ -1.11
SS18-203ENST00000415083 YLPM1P49750 1951 aaKnown RBP8.09□□□□□ -1.11
SS18-203ENST00000415083 SAA2-SAA4A0A096LPE2 208 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 PDE6DO43924 150 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 SAA2P0DJI9 122 aaPredicted RBP8.09□□□□□ -1.12
SS18-203ENST00000415083 CD99P14209 185 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 COMPP49747 757 aaPredicted RBP8.09□□□□□ -1.12
SS18-203ENST00000415083 TGFBR3Q03167 851 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 SMIM21Q3B7S5 101 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 IGFL2Q6UWQ7 119 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 OR52E5Q8NH55 327 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 SGMS2Q8NHU3 365 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 ZCCHC14Q8WYQ9 949 aaKnown RBP8.09□□□□□ -1.12
SS18-203ENST00000415083 FKBP11Q9NYL4 201 aa8.09□□□□□ -1.12
SS18-203ENST00000415083 ICE1Q9Y2F5 2266 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 FAM90A9PA6NNJ1 464 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 ADH4P08319 380 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 YPEL3P61236 119 aaPredicted RBP8.08□□□□□ -1.12
SS18-203ENST00000415083 LCN2P80188 198 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRR20EP86478 221 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRR20CP86479 221 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRR20DP86480 221 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRR20BP86481 221 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRR20AP86496 221 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 PRAMEF5Q5TYX0 476 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 ZNF705AQ6ZN79 300 aaPredicted RBP8.08□□□□□ -1.12
SS18-203ENST00000415083 Q6ZWC4 215 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 TMEM14BQ9NUH8 114 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 IDI2-AS1Q9NZ38 188 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 TRAPPC1Q9Y5R8 145 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 SVILO95425 2214 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 ZNF25P17030 456 aaPredicted RBP8.08□□□□□ -1.12
SS18-203ENST00000415083 IGFBP2P18065 325 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 CCL11P51671 97 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 OR5I1Q13606 314 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 BATFQ16520 125 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 KRTCAP3Q53RY4 240 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 ZNF709Q8N972 641 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 JPT1Q9UK76 154 aa8.08□□□□□ -1.12
SS18-203ENST00000415083 C15orf61A6NNL5 157 aa8.07□□□□□ -1.12
SS18-203ENST00000415083 C17orf112F2Z3M2 114 aa8.07□□□□□ -1.12
SS18-203ENST00000415083 GCGP01275 180 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms