RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 HLA-DRB1P01911 266 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 MBPP02686 304 aaPredicted RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 AMY1AP04745 511 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 NKX2-1P43699 371 aaPredicted RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 HSPE1P61604 102 aaKnown RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 TNFRSF9Q07011 255 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 PJVKQ0ZLH3 352 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 RBMS3Q6XE24 437 aaKnown RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 TMEM219Q86XT9 240 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 C5orf56Q8N8D9 126 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 OR5B3Q8NH48 314 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 QTRT1Q9BXR0 403 aaKnown RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 RANGRFQ9HD47 186 aaPredicted RBP11.33□□□□□ -0.6
SF3B1-204ENST00000414963 MTORP42345 2549 aa11.33□□□□□ -0.6
SF3B1-204ENST00000414963 TEX50A0A1B0GTY4 177 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 INAFM1C9JVW0 142 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 CLDN34H7C241 214 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 PSMB6P28072 239 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 COMPP49747 757 aaPredicted RBP11.32□□□□□ -0.6
SF3B1-204ENST00000414963 OR2B8PP59922 312 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 SPCS3P61009 180 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 FGL1Q08830 312 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 PLGLAQ15195 96 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 LY6EQ16553 131 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 ZNF562Q6V9R5 426 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 Q71RC1 249 aaPredicted RBP11.32□□□□□ -0.6
SF3B1-204ENST00000414963 PPP1R1CQ8WVI7 109 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 RASL11BQ9BPW5 248 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 OR51B2Q9Y5P1 312 aa11.32□□□□□ -0.6
SF3B1-204ENST00000414963 CHST1O43916 411 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 PFDN1O60925 122 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 CRLF1O75462 422 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 RBMXL2O75526 392 aaKnown RBP11.31□□□□□ -0.6
SF3B1-204ENST00000414963 MED6O75586 246 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 FAM157CP0CG43 387 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 SSBP2P81877 361 aaPredicted RBP11.31□□□□□ -0.6
SF3B1-204ENST00000414963 RAB32Q13637 225 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 OR1L8Q8NGR8 309 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 OR2T35Q8NGX2 323 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 COMMD5Q9GZQ3 224 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 NDUFA4L2Q9NRX3 87 aa11.31□□□□□ -0.6
SF3B1-204ENST00000414963 INS-IGF2F8WCM5 200 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 G3V3Q6 166 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 K7EPK0 472 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 ACTL6BO94805 426 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 MPC2O95563 127 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 LY86O95711 162 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 CA2P00918 260 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 IFNA17P01571 189 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 CX3CL1P78423 397 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 PRCDQ00LT1 54 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 CLCC1Q96S66 551 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 SRSF8Q9BRL6 282 aaKnown RBP11.3□□□□□ -0.6
SF3B1-204ENST00000414963 RNF126Q9BV68 326 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 C11orf1Q9H5F2 150 aa11.3□□□□□ -0.6
SF3B1-204ENST00000414963 TRAV14DV4A0A0A6YYC5 116 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 IGHV7-81A0A0B4J1V7 117 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 CGB1A6NKQ9 187 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 SYNGR2O43760 224 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 DEDDO75618 318 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 RLN2P04090 185 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 PET100P0DJ07 73 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 SLC25A4P12235 298 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 LYL1P12980 280 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 MYOD1P15172 320 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 RPL27AP46776 148 aaKnown RBP11.29□□□□□ -0.6
SF3B1-204ENST00000414963 POLR2GP62487 172 aaKnown RBP eCLIP11.29□□□□□ -0.6
SF3B1-204ENST00000414963 TNXAQ16473 311 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 Q5BKY6 102 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 ZNF418Q8TF45 676 aaPredicted RBP11.29□□□□□ -0.6
SF3B1-204ENST00000414963 RAB40CQ96S21 281 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 RBKSQ9H477 322 aa11.29□□□□□ -0.6
SF3B1-204ENST00000414963 RCL1Q9Y2P8 373 aaKnown RBP11.29□□□□□ -0.6
SF3B1-204ENST00000414963 TNCP24821 2201 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 A0A1B0GW64 132 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 DNAJC9-AS1A6NH13 148 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 E7EUB6 86 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 H0YIZ8 118 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 CNIH1O95406 144 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 SCGB1D2O95969 90 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 VDAC2P45880 294 aaPredicted RBP11.28□□□□□ -0.6
SF3B1-204ENST00000414963 TAS2R30P59541 319 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 HILS1P60008 231 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 CD300CQ08708 224 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 FXYD3Q14802 87 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 C10orf55Q5SWW7 151 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 C11orf87Q6NUJ2 197 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 PRSS54Q6PEW0 395 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 SRSF12Q8WXF0 261 aaKnown RBP11.28□□□□□ -0.6
SF3B1-204ENST00000414963 SMIM8Q96KF7 97 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 CIB3Q96Q77 187 aaPredicted RBP11.28□□□□□ -0.6
SF3B1-204ENST00000414963 MAGT1Q9H0U3 335 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 ESM1Q9NQ30 184 aa11.28□□□□□ -0.6
SF3B1-204ENST00000414963 FN1P02751 2386 aaKnown RBP11.27□□□□□ -0.6
SF3B1-204ENST00000414963 A0A1W2PN81 502 aa11.27□□□□□ -0.61
SF3B1-204ENST00000414963 CEBPZOSA8MTT3 80 aa11.27□□□□□ -0.61
SF3B1-204ENST00000414963 TEX22C9J3V5 150 aa11.27□□□□□ -0.61
SF3B1-204ENST00000414963 GPR137BO60478 399 aa11.27□□□□□ -0.61
SF3B1-204ENST00000414963 NXPH3O95157 252 aa11.27□□□□□ -0.61
SF3B1-204ENST00000414963 TMEM50AO95807 157 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms