RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SPCS1Q9Y6A9 102 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 TRBV6-7A0A0A0MS04 114 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 IGHV1-69-2A0A0G2JMI3 117 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 MED19A0JLT2 244 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 UBE2CO00762 179 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 HBDP02042 147 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ADRA2AP08913 450 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 COX6A1P12074 109 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 CD300CQ08708 224 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 LINC00305Q7Z4B0 112 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 NR2C2APQ86WQ0 139 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 BOD1L2Q8IYS8 172 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 FAM89BQ8N5H3 189 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF525Q8N782 197 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 FER1L6-AS1Q8NA97 138 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM52Q8NDY8 209 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 SOSTQ9BQB4 213 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 SRSF8Q9BRL6 282 aaKnown RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 TMSB15BA0A087X1C1 80 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 IGKV1-8A0A0C4DH67 115 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 OVOL1O14753 267 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 CCL4P13236 92 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 PLNP26678 52 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 PCOLCEQ15113 449 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 C18orf12Q96KH6 178 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1B0GWB2 263 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 SPINT1O43278 529 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 AGFG2O95081 481 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF205O95201 554 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 LINC00614P0C842 121 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 KLK2P20151 261 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 SSTR5P35346 364 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 FOXL1Q12952 345 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF56Q15929 161 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 C21orf62Q9NYP8 219 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1B0GV90 55 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 DPM2O94777 84 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM50AO95807 157 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 CA1P00915 261 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 CELA2BP08218 269 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 SUMO2P61956 95 aaKnown RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 MORN3Q6PF18 240 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 GOLT1AQ6ZVE7 132 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 NPIPB3Q92617 1050 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 DUX5Q96PT3 197 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 REPIN1Q9BWE0 567 aaKnown RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 SEMA5BQ9P283 1151 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 DTX4Q9Y2E6 619 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 LY75O60449 1722 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 ERVK11-1P61568 191 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 AGMATQ9BSE5 352 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 OPN3Q9H1Y3 402 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM106BQ9NUM4 274 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 COL24A1Q17RW2 1714 aa5.17□□□□□ -1.58
SCN1A-203ENST00000409050 IGKV3D-11A0A0A0MRZ8 115 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 TRAV21A0A0B4J279 112 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 HRKO00198 91 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 EFEMP2O95967 443 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 SLC25A48Q6ZT89 311 aaKnown RBP5.16□□□□□ -1.58
SCN1A-203ENST00000409050 LYPD1Q8N2G4 141 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 CYSLTR1Q9Y271 337 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 HS3ST3B1Q9Y662 390 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 A0A0G2JK05 382 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 PGPEP1LA6NFU8 196 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 MOSP00540 346 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 APOHP02749 345 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-203ENST00000409050 IFI27P40305 119 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-203ENST00000409050 DSCR9P59020 149 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 C21orf62-AS1Q17RA5 79 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF600Q6ZNG1 722 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 SAP25Q8TEE9 199 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 PLEKHB2Q96CS7 222 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 IGHV3OR15-7A0A075B7D8 119 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 ZIC4Q8N9L1 334 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 MGST2Q99735 147 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 SMOC1Q9H4F8 434 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 IGLV3-12A0A075B6K2 115 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 C1QTNF9P0C862 333 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 ID3Q02535 119 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 DMRTC1Q5HYR2 192 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 CFAP161Q6P656 301 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 C16orf47Q6ZP98 133 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-203ENST00000409050 VKORC1L1Q8N0U8 176 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 ORAOV1Q8WV07 137 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 EVPLQ92817 2033 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 GSN-AS1Q9NRJ2 163 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 MRPL27Q9P0M9 148 aaKnown RBP5.16□□□□□ -1.58
SCN1A-203ENST00000409050 CTAG1AP78358 180 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 KLRB1Q12918 225 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 ATXN8Q156A1 80 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 RNF182Q8N6D2 247 aa5.16□□□□□ -1.58
SCN1A-203ENST00000409050 SHROOM3Q8TF72 1996 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 TRBV6-6A0A0A6YYG2 114 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 RNF222A6NCQ9 220 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 C15orf61A6NNL5 157 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 TMEM238C9JI98 176 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 MBNL2Q5VZF2 373 aaKnown RBP5.15□□□□□ -1.58
SCN1A-203ENST00000409050 BIVMQ86UB2 503 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 OR5AN1Q8NGI8 311 aa5.15□□□□□ -1.58
SCN1A-203ENST00000409050 TSKUQ8WUA8 353 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms