RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NRN1Q9NPD7 142 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 THYN1Q9P016 225 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 COX11Q9Y6N1 276 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 MUC22E2RYF6 1773 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-206ENST00000405805 TMEM30CPA0ZSE6 113 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 CRYGSP22914 178 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 TFF3Q07654 80 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 OR8A1Q8NGG7 326 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 OR8B2Q96RD0 313 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 ARFGEF3Q5TH69 2177 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 PIEZO2Q9H5I5 2752 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 IGHV3OR15-7A0A075B7D8 119 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 SPRY3O43610 288 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 LYL1P12980 280 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 SLC25A53Q5H9E4 307 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 TMEM147Q9BVK8 224 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 SOX21Q9Y651 276 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-206ENST00000405805 A0A087WWC5 75 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 SLC25A17O43808 307 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 RAMP3O60896 148 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 SSTR5P35346 364 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF137PP52743 207 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 ARL16Q0P5N6 197 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 C10orf91Q5T1B1 145 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 STPG3Q8N7X2 389 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 OR2M7Q8NG81 312 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM170AQ8WVE7 144 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 IMMP1LQ96LU5 166 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 CEACAM18A8MTB9 384 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 ID3Q02535 119 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 MRPL14Q6P1L8 145 aaKnown RBP10.08□□□□□ -0.8
HMGB1-206ENST00000405805 FA2HQ7L5A8 372 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 LYG1Q8N1E2 194 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 FAM216AQ8WUB2 273 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 NOTCH3Q9UM47 2321 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 OR2T8A6NH00 312 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 J3QT63 122 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 ADH4P08319 380 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 CELA3BP08861 270 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 GNG4P50150 75 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 MFAP2P55001 183 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 GNB2P62879 340 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 TTC32Q5I0X7 151 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 PRR31Q5SQ13 230 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 PET117Q6UWS5 81 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 GP6Q9HCN6 339 aa10.08□□□□□ -0.8
HMGB1-206ENST00000405805 J3QW42 95 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 SLC17A3O00476 420 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 KLF7O75840 302 aaPredicted RBP10.07□□□□□ -0.8
HMGB1-206ENST00000405805 GFRA1P56159 465 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 FXYD3Q14802 87 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 PRSS3P2Q8NHM4 247 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 TRAV30A0A087WSZ9 112 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 TRGV5A0A0B4J1U4 118 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 IGHV3-48P01763 117 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 APCSP02743 223 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 RAB9AP51151 201 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 MIC13Q5XKP0 118 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 CFAP161Q6P656 301 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 DENND4AQ7Z401 1863 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 ABHD12Q8N2K0 398 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 SCCPDHQ8NBX0 429 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 S1PR3Q99500 378 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 CSTL1Q9H114 145 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF716A6NP11 495 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 HBZP02008 142 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 PLPPR1Q8TBJ4 325 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 QTRT1Q9BXR0 403 aaKnown RBP10.07□□□□□ -0.8
HMGB1-206ENST00000405805 SDF2L1Q9HCN8 221 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 MPC1Q9Y5U8 109 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 MED13Q9UHV7 2174 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 CTXND1A0A1B0GTU2 59 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 APELAP0DMC3 54 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 SELENOVP59797 346 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF525Q8N782 197 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 OR4P4Q8NGL7 312 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 PPP1R35Q8TAP8 253 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 ANAPC13Q9BS18 74 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 MAP1LC3CQ9BXW4 147 aa10.07□□□□□ -0.8
HMGB1-206ENST00000405805 YTHDF2Q9Y5A9 579 aaKnown RBP10.07□□□□□ -0.8
HMGB1-206ENST00000405805 C7orf71A4D174 169 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 CYC1P08574 325 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM177Q53S58 311 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 LRRC29Q8WV35 223 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM56Q96MV1 263 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TTTY12Q9BZ98 90 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM56-RWDD3S4R434 201 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TRAV24A0A0B4J272 114 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 IGKV1-6A0A0C4DH72 117 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TYMSP04818 313 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 ATP5G3P48201 142 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 UBE2G1P62253 170 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 PPP1R32Q7Z5V6 425 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 REPIN1Q9BWE0 567 aaKnown RBP10.06□□□□□ -0.8
HMGB1-206ENST00000405805 LOC107984156A0A0G2JMH3 177 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 C17orf98A8MV24 154 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 RBFOX2O43251 390 aaKnown RBP eCLIP10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TDGF1P13385 188 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 SERF2P84101 59 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 SSPNQ14714 243 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms