RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ANKRD55Q3KP44 614 aa23.05■■□□□ 1.28
USP42-202ENST00000404008 C19orf54Q5BKX5 351 aa23.05■■□□□ 1.28
USP42-202ENST00000404008 LGI3Q8N145 548 aa23.05■■□□□ 1.28
USP42-202ENST00000404008 PSMB11A5LHX3 300 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 SNAPC5O75971 98 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 MYOD1P15172 320 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 ECSCRQ19T08 205 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 C4orf46Q504U0 113 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 C10orf99Q6UWK7 81 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 LYG2Q86SG7 212 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 SLC35G3Q8N808 338 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 CASTOR1Q8WTX7 329 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 RRNAD1Q96FB5 475 aaKnown RBP23.04■■□□□ 1.28
USP42-202ENST00000404008 NSG2Q9Y328 171 aa23.04■■□□□ 1.28
USP42-202ENST00000404008 TET2Q6N021 2002 aaPredicted RBP23.04■■□□□ 1.28
USP42-202ENST00000404008 A0A0G2JRQ6 117 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 IZUMO4Q1ZYL8 232 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 AKIRIN2Q53H80 203 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 ZNF329Q86UD4 541 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 LRTM2Q8N967 370 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 LFNGQ8NES3 379 aa23.03■■□□□ 1.28
USP42-202ENST00000404008 RNASE11Q8TAA1 199 aaKnown RBP23.03■■□□□ 1.28
USP42-202ENST00000404008 MSGN1A6NI15 193 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 RPL27AP46776 148 aaKnown RBP23.02■■□□□ 1.28
USP42-202ENST00000404008 OR2B8PP59922 312 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 SLC35B1P78383 322 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 TMEM267Q0VDI3 215 aaPredicted RBP23.02■■□□□ 1.28
USP42-202ENST00000404008 DCTN2Q13561 401 aaKnown RBP23.02■■□□□ 1.28
USP42-202ENST00000404008 FAM219AQ8IW50 185 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 C3orf56Q8N813 242 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 OR5AU1Q8NGC0 362 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 ZNF747Q9BV97 191 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 COMMD5Q9GZQ3 224 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 TMEM14BQ9NUH8 114 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 PRNDQ9UKY0 176 aa23.02■■□□□ 1.28
USP42-202ENST00000404008 A0A0B4J2A0 478 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 PIGBOS1A0A0B4J2F0 54 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 C15orf61A6NNL5 157 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 E7EUB6 86 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 PPIFP30405 207 aaKnown RBP23.01■■□□□ 1.27
USP42-202ENST00000404008 LYZL2Q7Z4W2 148 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 MINDY2Q8NBR6 621 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 OR4A16Q8NH70 328 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 LSM10Q969L4 123 aaKnown RBP23.01■■□□□ 1.27
USP42-202ENST00000404008 PHB2Q99623 299 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 SHPKQ9UHJ6 478 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 A0A1B0GW64 132 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 DBX1A6NMT0 343 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 DUS4LO95620 317 aaKnown RBP23.01■■□□□ 1.27
USP42-202ENST00000404008 OPN1MWP04001 364 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 OPN1MW2P0DN77 364 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 OPN1MW3P0DN78 364 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 RAB25P57735 213 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 SRSF4Q08170 494 aaKnown RBP23.01■■□□□ 1.27
USP42-202ENST00000404008 ASPHD1Q5U4P2 390 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 PLET1Q6UQ28 207 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 UNQ5815/PRO19632Q6UWF5 114 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 SPIN2AQ99865 258 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 SPIN2BQ9BPZ2 258 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 FKBP11Q9NYL4 201 aa23.01■■□□□ 1.27
USP42-202ENST00000404008 FOXA2Q9Y261 457 aaPredicted RBP23.01■■□□□ 1.27
USP42-202ENST00000404008 A0A0B4J293 547 aa23■■□□□ 1.27
USP42-202ENST00000404008 CGB1A6NKQ9 187 aa23■■□□□ 1.27
USP42-202ENST00000404008 TEX22C9J3V5 150 aa23■■□□□ 1.27
USP42-202ENST00000404008 OR52B4Q8NGK2 314 aa23■■□□□ 1.27
USP42-202ENST00000404008 OR51B2Q9Y5P1 312 aa23■■□□□ 1.27
USP42-202ENST00000404008 TEX50A0A1B0GTY4 177 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 DUXBA0A1W2PPF3 345 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 PTTG1O95997 202 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 IGHG4P01861 327 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 APELAP0DMC3 54 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 GPR146Q96CH1 333 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 TMEM68Q96MH6 324 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 FYTTD1Q96QD9 318 aaKnown RBP22.99■■□□□ 1.27
USP42-202ENST00000404008 CITED1Q99966 193 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 MARVELD1Q9BSK0 173 aa22.99■■□□□ 1.27
USP42-202ENST00000404008 CD28P10747 220 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 SPNP16150 400 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 NMSQ5H8A3 153 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 TEX38Q6PEX7 206 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 Q6ZRM9 215 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 OR4X2Q8NGF9 303 aa22.98■■□□□ 1.27
USP42-202ENST00000404008 QTRT1Q9BXR0 403 aaKnown RBP22.98■■□□□ 1.27
USP42-202ENST00000404008 A0A1W2PN81 502 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 SOX15O60248 233 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 FBXO24O75426 580 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 IGLV1-40P01703 118 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 CHRNA7P36544 502 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 TCTEX1D4Q5JR98 221 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 ZNF429Q86V71 674 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 COMMD1Q8N668 190 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 C11orf44Q8N8P7 122 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 OR1L8Q8NGR8 309 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 OR5B3Q8NH48 314 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 COQ8AQ8NI60 647 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 MITD1Q8WV92 249 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 SEC22CQ9BRL7 303 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 ZNF257Q9Y2Q1 563 aa22.97■■□□□ 1.27
USP42-202ENST00000404008 HMX3A6NHT5 357 aa22.96■■□□□ 1.27
USP42-202ENST00000404008 RBMXL2O75526 392 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms