RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 KCNIP2Q9NS61 270 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 SNURFLB1AK76 121 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 DUTP33316 252 aaKnown RBP17.34■□□□□ 0.37
CTCF-202ENST00000401394 FOXL1Q12952 345 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 CNEP1R1Q8N9A8 125 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 FAM216AQ8WUB2 273 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 FBXL7Q9UJT9 491 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 DUX4L9Q6RFH8 374 aaPredicted RBP17.34■□□□□ 0.37
CTCF-202ENST00000401394 LRFN3Q9BTN0 628 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 PTPRBP23467 1997 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 PLXNB1O43157 2135 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 GPR12P47775 334 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 UBE2NP61088 152 aaKnown RBP17.34■□□□□ 0.37
CTCF-202ENST00000401394 MIR17HGQ75NE6 70 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 OR4A16Q8NH70 328 aa17.34■□□□□ 0.37
CTCF-202ENST00000401394 INTS1Q8N201 2190 aaKnown RBP17.34■□□□□ 0.37
CTCF-202ENST00000401394 KMT2EQ8IZD2 1858 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 GFRA3O60609 400 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 OR10J4P0C629 311 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 STAG3L2P0CL84 134 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 STAG3L3P0CL85 134 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 COMPP49747 757 aaPredicted RBP17.33■□□□□ 0.37
CTCF-202ENST00000401394 SAMD10Q9BYL1 202 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 SVEP1Q4LDE5 3571 aa17.33■□□□□ 0.37
CTCF-202ENST00000401394 MAJINQ3KP22 176 aa17.33■□□□□ 0.36
CTCF-202ENST00000401394 FAM19A2Q8N3H0 131 aa17.33■□□□□ 0.36
CTCF-202ENST00000401394 TRAV34A0A0B4J273 112 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 IL6RP08887 468 aaPredicted RBP17.32■□□□□ 0.36
CTCF-202ENST00000401394 IGFBP2P18065 325 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 EFNB3Q15768 340 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 Q8IYB0 196 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 UBALD2Q8IYN6 164 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 CIB3Q96Q77 187 aaPredicted RBP17.32■□□□□ 0.36
CTCF-202ENST00000401394 CNOT1A5YKK6 2376 aaKnown RBP17.32■□□□□ 0.36
CTCF-202ENST00000401394 CRYBB3P26998 211 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 ZNF718Q3SXZ3 478 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 GNB4Q9HAV0 340 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 TECTAO75443 2155 aa17.32■□□□□ 0.36
CTCF-202ENST00000401394 SP1P08047 785 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 GCHFRP30047 84 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 SLC35E4Q6ICL7 350 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 LHFPL4Q7Z7J7 247 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 STPG3Q8N7X2 389 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 UHRF2Q96PU4 802 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 HES4Q9HCC6 221 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 DUSP13Q9UII6 198 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 C15orf65H3BRN8 121 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 TIMM8AO60220 97 aaPredicted RBP17.31■□□□□ 0.36
CTCF-202ENST00000401394 PMCHP20382 165 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 LINC00479Q96M42 142 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 TP73-AS1Q9UF72 201 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 YLPM1P49750 1951 aaKnown RBP17.31■□□□□ 0.36
CTCF-202ENST00000401394 PRSS46E5RG02 174 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 MRPL54Q6P161 138 aaKnown RBP17.31■□□□□ 0.36
CTCF-202ENST00000401394 WNT10AQ9GZT5 417 aa17.31■□□□□ 0.36
CTCF-202ENST00000401394 VDAC2P45880 294 aaPredicted RBP17.3■□□□□ 0.36
CTCF-202ENST00000401394 DUSP3P51452 185 aaPredicted RBP17.3■□□□□ 0.36
CTCF-202ENST00000401394 MMD2Q8IY49 270 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 LRRC29Q8WV35 223 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 TAAR6Q96RI8 345 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 TMEM140Q9NV12 185 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 IGHV3-48P01763 117 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 MSMPQ1L6U9 139 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 VWA1Q6PCB0 445 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 PQLC2Q6ZP29 291 aa17.3■□□□□ 0.36
CTCF-202ENST00000401394 HSD17B10Q99714 261 aaKnown RBP17.3■□□□□ 0.36
CTCF-202ENST00000401394 PIGBOS1A0A0B4J2F0 54 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 YPEL3P61236 119 aaPredicted RBP17.29■□□□□ 0.36
CTCF-202ENST00000401394 RELBQ01201 579 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 MMDQ15546 238 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 NAV3Q8IVL0 2385 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 IQCF6A8MYZ5 107 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 BTF3P20290 206 aaKnown RBP17.29■□□□□ 0.36
CTCF-202ENST00000401394 POLEQ07864 2286 aa17.29■□□□□ 0.36
CTCF-202ENST00000401394 PRB4P10163 310 aaPredicted RBP17.28■□□□□ 0.36
CTCF-202ENST00000401394 SRSF6Q13247 344 aaKnown RBP17.28■□□□□ 0.36
CTCF-202ENST00000401394 ZBTB34Q8NCN2 500 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 NANOS1Q8WY41 292 aaKnown RBP17.28■□□□□ 0.36
CTCF-202ENST00000401394 BTF3L4Q96K17 158 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 SSBP3Q9BWW4 388 aaPredicted RBP17.28■□□□□ 0.36
CTCF-202ENST00000401394 TCF19Q9Y242 345 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 BRS3P32247 399 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 OR5AU1Q8NGC0 362 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 EAF1Q96JC9 268 aaPredicted RBP17.28■□□□□ 0.36
CTCF-202ENST00000401394 LPAR2Q9HBW0 351 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 IL36BQ9NZH7 164 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 CXorf1O96002 111 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 OPRK1P41145 380 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 PSG5Q15238 335 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 MORN2Q502X0 79 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 DMRTA1Q5VZB9 504 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 OR2Z1Q8NG97 314 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 FAM168AQ92567 244 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 GCM1Q9NP62 436 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 NAT8BQ9UHF3 227 aa17.28■□□□□ 0.36
CTCF-202ENST00000401394 PKDREJQ9NTG1 2253 aa17.27■□□□□ 0.36
CTCF-202ENST00000401394 TPRP12270 2363 aaKnown RBP17.27■□□□□ 0.36
CTCF-202ENST00000401394 LGALS4P56470 323 aa17.27■□□□□ 0.36
CTCF-202ENST00000401394 TPPP2P59282 170 aa17.27■□□□□ 0.36
CTCF-202ENST00000401394 CENPWQ5EE01 88 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms