RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 C5orf56Q8N8D9 126 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 ZNF383Q8NA42 475 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 RNASE11Q8TAA1 199 aaKnown RBP8.12□□□□□ -1.11
NEDD8-202ENST00000396828 DDB2Q92466 427 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 NABP2Q9BQ15 211 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 AIFM2Q9BRQ8 373 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 PDCD10Q9BUL8 212 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 MRPL20Q9BYC9 149 aaKnown RBP8.12□□□□□ -1.11
NEDD8-202ENST00000396828 PLEKHA2Q9HB19 425 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 SLC35D1Q9NTN3 355 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 MOB4Q9Y3A3 225 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 TMED3Q9Y3Q3 217 aa8.12□□□□□ -1.11
NEDD8-202ENST00000396828 C5orf51A6NDU8 294 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 FAM25EA8MYX2 175 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 RAMP3O60896 148 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 CCNKO75909 580 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 HOXB5P09067 269 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 FAM106CPP0CH98 169 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 HLA-GP17693 338 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 AKR1C2P52895 323 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 ERVK-16P61578 105 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 LCNL1Q6ZST4 164 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 THNSL2Q86YJ6 484 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 PDPNQ86YL7 162 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 SLC35G3Q8N808 338 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 OR11H7Q8NGC8 314 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 OR5AN1Q8NGI8 311 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 ASB13Q8WXK3 278 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 RRNAD1Q96FB5 475 aaKnown RBP8.11□□□□□ -1.11
NEDD8-202ENST00000396828 ZNF436Q9C0F3 470 aaPredicted RBP8.11□□□□□ -1.11
NEDD8-202ENST00000396828 COMMD9Q9P000 198 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 WASHC3Q9Y3C0 194 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 SACSQ9NZJ4 4579 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 STAB2Q8WWQ8 2551 aa8.11□□□□□ -1.11
NEDD8-202ENST00000396828 IGHV3-72A0A0B4J1Y9 119 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 C13orf42A0A1B0GVH6 325 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 H0YJW9 148 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 ADAP1O75689 374 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 CRYZL1O95825 349 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 HRASP01112 189 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 IGKV1D-33P01593 117 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 IGKV1-33P01594 117 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 CXCL3P19876 107 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 VDAC1P21796 283 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 LINC00205P59089 165 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 CYCSP99999 105 aaKnown RBP8.1□□□□□ -1.11
NEDD8-202ENST00000396828 HES1Q14469 280 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 ZNF585BQ52M93 769 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 GGNBP1Q5YKI7 109 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 LYZL2Q7Z4W2 148 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 FAM219AQ8IW50 185 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 DMBX1Q8NFW5 382 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 OR5M8Q8NGP6 311 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 LHFPL5Q8TAF8 219 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 OSR1Q8TAX0 266 aaPredicted RBP8.1□□□□□ -1.11
NEDD8-202ENST00000396828 FLYWCH2Q96CP2 140 aaKnown RBP8.1□□□□□ -1.11
NEDD8-202ENST00000396828 P2RX4Q99571 388 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 SPIN2AQ99865 258 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 SPIN2BQ9BPZ2 258 aa8.1□□□□□ -1.11
NEDD8-202ENST00000396828 M0QZK8 103 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 CCSO14618 274 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 SHOXO15266 292 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 S1PR2O95136 353 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 KRASP01116 189 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 IGHG2P01859 326 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 GIPP09681 153 aaPredicted RBP8.09□□□□□ -1.11
NEDD8-202ENST00000396828 NQO2P16083 231 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 TMEM11P17152 192 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 CD1BP29016 333 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 BRWD1-AS2P59051 145 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 CD69Q07108 199 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 DEFB136Q30KP8 78 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 THOC7Q6I9Y2 204 aaKnown RBP8.09□□□□□ -1.11
NEDD8-202ENST00000396828 H2BFWTQ7Z2G1 175 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 KLHL30-AS1Q8NEE0 82 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 LSM10Q969L4 123 aaKnown RBP8.09□□□□□ -1.11
NEDD8-202ENST00000396828 RAX2Q96IS3 184 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 C2orf50Q96LR7 162 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 B9D2Q9BPU9 175 aa8.09□□□□□ -1.11
NEDD8-202ENST00000396828 MARCH11A6NNE9 402 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 SIX6O95475 246 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 IGKV1-39P01597 117 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 IGKV1-16P04430 117 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 IGKV1D-39P04432 117 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 RPLP1P05386 114 aaKnown RBP8.08□□□□□ -1.12
NEDD8-202ENST00000396828 SLC25A6P12236 298 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 G6PCP35575 357 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 LGALS7P47929 136 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 H2BFSP57053 126 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 RAP2BP61225 183 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 RPS16P62249 146 aaKnown RBP8.08□□□□□ -1.12
NEDD8-202ENST00000396828 IAH1Q2TAA2 248 aaPredicted RBP8.08□□□□□ -1.12
NEDD8-202ENST00000396828 TMEM177Q53S58 311 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 SLC35E3Q7Z769 313 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 STPG2Q8N412 459 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 Q8N6K4 173 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 VSTM2AQ8TAG5 236 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 SEC22AQ96IW7 307 aa8.08□□□□□ -1.12
NEDD8-202ENST00000396828 EAF1Q96JC9 268 aaPredicted RBP8.08□□□□□ -1.12
NEDD8-202ENST00000396828 HARBI1Q96MB7 349 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms