RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 ZNF596Q8TC21 504 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 GGTLC1Q9BX51 225 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 CTDSP1Q9GZU7 261 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 NPVFQ9HCQ7 196 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 BET1LQ9NYM9 111 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 KAAG1Q9UBP8 84 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 OR51B2Q9Y5P1 312 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 FAM87AP0C7U9 286 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 ATP5IP56385 69 aaPredicted RBP13.72□□□□□ -0.21
NUP50-202ENST00000396096 ERVFRD-1P60508 538 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 PRCDQ00LT1 54 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 FAM71F2Q6NXP2 309 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 ZNF343Q6P1L6 599 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 LINC00311Q8N616 119 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 C1orf159Q96HA4 380 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 SMIM7Q9BQ49 75 aa13.72□□□□□ -0.21
NUP50-202ENST00000396096 METTL1Q9UBP6 276 aaKnown RBP13.72□□□□□ -0.21
NUP50-202ENST00000396096 CLDN34H7C241 214 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 NDUFB3O43676 98 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 CXCL1P09341 107 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 TMEM241Q24JQ0 296 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 LRRC10Q5BKY1 277 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 OSR1Q8TAX0 266 aaPredicted RBP13.71□□□□□ -0.21
NUP50-202ENST00000396096 GATAD1Q8WUU5 269 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 CCL17Q92583 94 aa13.71□□□□□ -0.21
NUP50-202ENST00000396096 BSNQ9UPA5 3926 aa13.71□□□□□ -0.22
NUP50-202ENST00000396096 SRRM4A7MD48 611 aaKnown RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 CA2P00918 260 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 IGKV1-16P04430 117 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 CCL3L1P16619 93 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 ARSJQ5FYB0 599 aaPredicted RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 NEIL1Q96FI4 390 aaPredicted RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 DYNLRB1Q9NP97 96 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 FKBP11Q9NYL4 201 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 ZNRD1Q9P1U0 126 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 PXMP4Q9Y6I8 212 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 J3QR06 171 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 PAGE4O60829 102 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 APOBEC3AP31941 199 aaPredicted RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 RPS10P46783 165 aaKnown RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 GCSAMLQ5JQS6 135 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 LYPD2Q6UXB3 125 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 OR5AN1Q8NGI8 311 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 OR4F5Q8NH21 305 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 OR4F4Q96R69 305 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 MRPL20Q9BYC9 149 aaKnown RBP13.7□□□□□ -0.22
NUP50-202ENST00000396096 PARLQ9H300 379 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 CTSZQ9UBR2 303 aa13.7□□□□□ -0.22
NUP50-202ENST00000396096 PTPRZ1P23471 2315 aaPredicted RBP13.69□□□□□ -0.22
NUP50-202ENST00000396096 A0A1W2PPV4 95 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 ZNF98A6NK75 572 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 B9A039 149 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 APOA2P02652 100 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 DEFA4P12838 97 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 DLX6P56179 175 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 FBXL19-AS1Q494R0 122 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 TMEM177Q53S58 311 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 TEPPQ6URK8 271 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 OR5B3Q8NH48 314 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 NEUROG1Q92886 237 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 PLEKHA3Q9HB20 300 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 LAMA5O15230 3695 aa13.69□□□□□ -0.22
NUP50-202ENST00000396096 MAP1BP46821 2468 aaKnown RBP13.68□□□□□ -0.22
NUP50-202ENST00000396096 A0A087X0M5 115 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 TGIF2-C20orf24A0A0A6YYL0 155 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 TEX50A0A1B0GTY4 177 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 A0A1B0GX30 115 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 H0YJW9 148 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 AP4M1O00189 453 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 CD3EP07766 207 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 STAG3L2P0CL84 134 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 STAG3L3P0CL85 134 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 LOXP28300 417 aaPredicted RBP13.68□□□□□ -0.22
NUP50-202ENST00000396096 UCNP55089 124 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 BSXQ3C1V8 233 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 MIC13Q5XKP0 118 aa13.68□□□□□ -0.22
NUP50-202ENST00000396096 DVL1O14640 695 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 OPN1MWP04001 364 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 SAA1P0DJI8 122 aaPredicted RBP13.67□□□□□ -0.22
NUP50-202ENST00000396096 OPN1MW2P0DN77 364 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 OPN1MW3P0DN78 364 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 MYOD1P15172 320 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 RPL29P47914 159 aaKnown RBP13.67□□□□□ -0.22
NUP50-202ENST00000396096 ZNF137PP52743 207 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 RPL23P62829 140 aaKnown RBP13.67□□□□□ -0.22
NUP50-202ENST00000396096 H1FXQ92522 213 aaKnown RBP13.67□□□□□ -0.22
NUP50-202ENST00000396096 TMEM186Q96B77 213 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 RPUSD4Q96CM3 377 aaKnown RBP13.67□□□□□ -0.22
NUP50-202ENST00000396096 TXNDC17Q9BRA2 123 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 URGCP-MRPS24S4R325 110 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 PCNX1Q96RV3 2341 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 C11orf94C9JXX5 98 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 INS-IGF2F8WCM5 200 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 TGOLN2O43493 480 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 PDE6DO43924 150 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 S100A8P05109 93 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 CA7P43166 264 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 CASP6P55212 293 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 RAB31Q13636 194 aa13.67□□□□□ -0.22
NUP50-202ENST00000396096 ZNF674Q2M3X9 581 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms