RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ZNF709Q8N972 641 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 SLC24A4Q8NFF2 622 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 PLEKHA3Q9HB20 300 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 AMMECR1Q9Y4X0 333 aaPredicted RBP20.44■□□□□ 0.86
SHOX2-201ENST00000389589 C9JQL5 133 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 C17orf112F2Z3M2 114 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 MBP02144 154 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 USF1P22415 310 aaPredicted RBP20.44■□□□□ 0.86
SHOX2-201ENST00000389589 DLK1P80370 383 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 MBD3L1Q8WWY6 194 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 SSBP3Q9BWW4 388 aaPredicted RBP20.44■□□□□ 0.86
SHOX2-201ENST00000389589 NKX6-2Q9C056 277 aaPredicted RBP20.44■□□□□ 0.86
SHOX2-201ENST00000389589 GOSR1O95249 250 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 NPY1RP25929 384 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 GPR6P46095 362 aaPredicted RBP20.43■□□□□ 0.86
SHOX2-201ENST00000389589 ATP5IP56385 69 aaPredicted RBP20.43■□□□□ 0.86
SHOX2-201ENST00000389589 ATRAIDQ6UW56 229 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 NPCDR1Q9BY65 106 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 VSIRQ9H7M9 311 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 ONECUT1Q9UBC0 465 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 WDR83OSQ9Y284 106 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 TNCP24821 2201 aa20.43■□□□□ 0.86
SHOX2-201ENST00000389589 TEX50A0A1B0GTY4 177 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 C22orf46C9J442 243 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 PRSS46E5RG02 174 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 MPDU1O75352 247 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 IFNA4P05014 189 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 EFNA4P52798 201 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 CCL20P78556 96 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 BTN1A1Q13410 526 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 TMEM167AQ8TBQ9 72 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 SUN5Q8TC36 379 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 HINT2Q9BX68 163 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 KPTNQ9Y664 436 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 BUB1B-PAK6H3BSN5 160 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 GUCA2BQ16661 112 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 TMEM170AQ8WVE7 144 aa20.42■□□□□ 0.86
SHOX2-201ENST00000389589 RBFOX3A6NFN3 312 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 SOX15O60248 233 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 PPT1P50897 306 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 ELLP55199 621 aaPredicted RBP20.41■□□□□ 0.86
SHOX2-201ENST00000389589 RPL8P62917 257 aaKnown RBP20.41■□□□□ 0.86
SHOX2-201ENST00000389589 IGSF10Q6WRI0 2623 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 LOC105371242A0A075B767 164 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 M0R1W7 72 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 SNAPINO95295 136 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 MYOD1P15172 320 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 LGALS7P47929 136 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 RCC1LQ96I51 464 aaKnown RBP20.41■□□□□ 0.86
SHOX2-201ENST00000389589 COMMD5Q9GZQ3 224 aa20.41■□□□□ 0.86
SHOX2-201ENST00000389589 VMA21Q3ZAQ7 101 aa20.4■□□□□ 0.86
SHOX2-201ENST00000389589 CA2P00918 260 aa20.39■□□□□ 0.86
SHOX2-201ENST00000389589 OR1L8Q8NGR8 309 aa20.39■□□□□ 0.86
SHOX2-201ENST00000389589 SLC35B3Q9H1N7 401 aa20.39■□□□□ 0.86
SHOX2-201ENST00000389589 IGLV2-23P01705 113 aa20.39■□□□□ 0.85
SHOX2-201ENST00000389589 COX7A1P24310 79 aa20.39■□□□□ 0.85
SHOX2-201ENST00000389589 ZNF726P1Q15940 193 aa20.39■□□□□ 0.85
SHOX2-201ENST00000389589 ACSM6Q6P461 480 aa20.39■□□□□ 0.85
SHOX2-201ENST00000389589 FFAR4Q5NUL3 377 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 ZNF787Q6DD87 383 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 OR4P4Q8NGL7 312 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 INSIG2Q9Y5U4 225 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 DCHS2Q6V1P9 2916 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 SMCO3A2RU48 225 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 DLX1P56177 255 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 PNKDQ8N490 385 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 Q8N7P7 452 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 NDUFA4L2Q9NRX3 87 aa20.38■□□□□ 0.85
SHOX2-201ENST00000389589 FNDC10F2Z333 226 aa20.37■□□□□ 0.85
SHOX2-201ENST00000389589 INS-IGF2F8WCM5 200 aa20.37■□□□□ 0.85
SHOX2-201ENST00000389589 TREML4Q6UXN2 200 aa20.37■□□□□ 0.85
SHOX2-201ENST00000389589 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.37■□□□□ 0.85
SHOX2-201ENST00000389589 CLDND2Q8NHS1 167 aa20.37■□□□□ 0.85
SHOX2-201ENST00000389589 NPVFQ9HCQ7 196 aa20.37■□□□□ 0.85
SHOX2-201ENST00000389589 IGHV1-3A0A0C4DH29 117 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 ENSAO43768 121 aaKnown RBP20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OPN1MWP04001 364 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OPN1MW2P0DN77 364 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OPN1MW3P0DN78 364 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 HNF4GQ14541 408 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 ZNF506Q5JVG8 444 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 LCN15Q6UWW0 184 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 RPP25LQ8N5L8 163 aaKnown RBP20.36■□□□□ 0.85
SHOX2-201ENST00000389589 RPEQ96AT9 228 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 RARRES2Q99969 163 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 SLC39A9Q9NUM3 307 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 CFAP46Q8IYW2 2715 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 NDUFS7O75251 213 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 ARF6P62330 175 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 C2orf83Q53S99 150 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OR11H6Q8NGC7 330 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OR10G4Q8NGN3 311 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OR10G9Q8NGN4 311 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 OR10G7Q8NGN6 311 aa20.36■□□□□ 0.85
SHOX2-201ENST00000389589 A0A1W2PN81 502 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 MAP1LC3B2A6NCE7 125 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 LY6LH3BQJ8 138 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 CHRNA7P36544 502 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 BSXQ3C1V8 233 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 C1orf122Q6ZSJ8 110 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms