RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 TMEM250H0YL14 139 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 HLA-DRB1P01911 266 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 C9orf106Q8NAJ2 232 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 GALNT14Q96FL9 552 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 AMY1AP04745 511 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 GCSHP23434 173 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 HSPE1P61604 102 aaKnown RBP12.73□□□□□ -0.37
NPHP4-201ENST00000378156 OR9G1Q8NH87 305 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 CEACAM18A8MTB9 384 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 SOD3P08294 240 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 SSTR5P35346 364 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 LRRC75BQ2VPJ9 315 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 ABHD12Q8N2K0 398 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 HIGD1AQ9Y241 93 aa12.73□□□□□ -0.37
NPHP4-201ENST00000378156 IGKV3-7A0A075B6H7 116 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 LOC105371267A0A1B0GV96 52 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 KBTBD11O94819 623 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 FAM106CPP0CH98 169 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 APOBEC3AP31941 199 aaPredicted RBP12.72□□□□□ -0.37
NPHP4-201ENST00000378156 WNT5AP41221 380 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 HOXA4Q00056 320 aaPredicted RBP12.72□□□□□ -0.37
NPHP4-201ENST00000378156 DRAM1Q8N682 238 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 TMEM208Q9BTX3 173 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 QTRT1Q9BXR0 403 aaKnown RBP12.72□□□□□ -0.37
NPHP4-201ENST00000378156 DOPEY2Q9Y3R5 2298 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 SLC25A17O43808 307 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 TAS2R60P59551 318 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 TMEM30BQ3MIR4 351 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 CACNA1BQ00975 2339 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 TWIST1Q15672 202 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 HCP5Q6MZN7 132 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 RAB37Q96AX2 223 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 IL36RNQ9UBH0 155 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 IGHV2OR16-5A0A0B4J2B6 119 aa12.72□□□□□ -0.37
NPHP4-201ENST00000378156 DIDO1Q9BTC0 2240 aaKnown RBP12.72□□□□□ -0.37
NPHP4-201ENST00000378156 VENTXO95231 258 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 OR1N2Q8NGR9 330 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 GSN-AS1Q9NRJ2 163 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 IGKV1D-8A0A087WSZ0 117 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 UQCRFS1P47985 274 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 TNFRSF9Q07011 255 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 S1PR2O95136 353 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 SLC35B1P78383 322 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 SPANXN1Q5VSR9 72 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 ACP7Q6ZNF0 438 aa12.71□□□□□ -0.37
NPHP4-201ENST00000378156 LCN2P80188 198 aa12.71□□□□□ -0.38
NPHP4-201ENST00000378156 BIVMQ86UB2 503 aa12.71□□□□□ -0.38
NPHP4-201ENST00000378156 LSM10Q969L4 123 aaKnown RBP12.71□□□□□ -0.38
NPHP4-201ENST00000378156 ZG16O60844 167 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 CCL1P22362 96 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 ZNF506Q5JVG8 444 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 SPSB4Q96A44 273 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 PSMG3Q9BT73 122 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-201ENST00000378156 TMEM189A5PLL7 270 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 ZNF600Q6ZNG1 722 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 RBPMS2Q6ZRY4 209 aaKnown RBP12.7□□□□□ -0.38
NPHP4-201ENST00000378156 TMEM186Q96B77 213 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 PARLQ9H300 379 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 GFRA1P56159 465 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 SRSF3P84103 164 aaKnown RBP12.7□□□□□ -0.38
NPHP4-201ENST00000378156 PRNTQ86SH4 94 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 FAM89BQ8N5H3 189 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 OR4C13Q8NGP0 309 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 LOC107984156A0A0G2JMH3 177 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 LIPFP07098 398 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 ATP5J2P56134 94 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 RNF144BQ7Z419 303 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 ARL17AQ8IVW1 177 aa12.7□□□□□ -0.38
NPHP4-201ENST00000378156 PINLYPA6NC86 204 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 C12orf77C9JDV5 145 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 LINC00869P0C866 280 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 FAM166AQ6J272 317 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 FAM216AQ8WUB2 273 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 WBP1Q96G27 269 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 PEF1Q9UBV8 284 aaKnown RBP12.69□□□□□ -0.38
NPHP4-201ENST00000378156 PROB1E7EW31 1015 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 CELA3BP08861 270 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 SMAGPQ0VAQ4 97 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 C19orf24Q9BVV8 132 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 TMEM106BQ9NUM4 274 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 TCF19Q9Y242 345 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 LOC105371242A0A075B767 164 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 LDLRAD4O15165 306 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 MGPP08493 103 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 SNRPCP09234 159 aaKnown RBP12.69□□□□□ -0.38
NPHP4-201ENST00000378156 SRIP30626 198 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 SMIM8Q96KF7 97 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 RPRMQ9NS64 109 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 ANAPC1Q9H1A4 1944 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 TMSB15BA0A087X1C1 80 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 ZNF841Q6ZN19 808 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 RTN4RL2Q86UN3 420 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 OR10AG1Q8NH19 301 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 ZNF502Q8TBZ5 544 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 CLEC7AQ9BXN2 247 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 SEMA5BQ9P283 1151 aa12.69□□□□□ -0.38
NPHP4-201ENST00000378156 MYO7BQ6PIF6 2116 aa12.68□□□□□ -0.38
NPHP4-201ENST00000378156 LOC389332A0A1B0GUA5 103 aa12.68□□□□□ -0.38
NPHP4-201ENST00000378156 CKS2P33552 79 aa12.68□□□□□ -0.38
NPHP4-201ENST00000378156 WDR31Q8NA23 367 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms