RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TRAF4Q9BUZ4 470 aaPredicted RBP9.13□□□□□ -0.95
RTN3-206ENST00000377819 DDA1Q9BW61 102 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 MEGF9Q9H1U4 602 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 FOXJ2Q9P0K8 574 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 ADAMTSL1Q8N6G6 1762 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 NOTCH2Q04721 2471 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 FGF12P61328 243 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 CEACAM21Q3KPI0 293 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 NR2C2APQ86WQ0 139 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 RIMKLAQ8IXN7 391 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 ARPC1AQ92747 370 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 ZNF703Q9H7S9 590 aaPredicted RBP9.13□□□□□ -0.95
RTN3-206ENST00000377819 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
RTN3-206ENST00000377819 ZNF729A6NN14 1252 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 CCL3P10147 92 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 DTX1Q86Y01 620 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 CIARTQ8N365 385 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 IGHV3OR16-10A0A075B7F0 116 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 ZNHIT1O43257 154 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 APOHP02749 345 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 P2RY4P51582 365 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 ERVK11-1P61568 191 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 DMKNQ6E0U4 476 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 ORMDL3Q8N138 153 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 TMEM167AQ8TBQ9 72 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 SSBP4Q9BWG4 385 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 C21orf62Q9NYP8 219 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 KCNE1BA0A087WTH5 132 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 A0A1W2PRX2 142 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 B9A039 149 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 FAM27BQ5VT28 67 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 UCN2Q96RP3 112 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 PRADC1Q9BSG0 188 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 SLIRPQ9GZT3 109 aaKnown RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 METRNQ9UJH8 293 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 FBXL7Q9UJT9 491 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 MYH2Q9UKX2 1941 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 CXorf65A6NEN9 183 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 CRYBB2P43320 205 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 ZNF585BQ52M93 769 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 SFTA2Q6UW10 78 aa9.12□□□□□ -0.95
RTN3-206ENST00000377819 SSBP3Q9BWW4 388 aaPredicted RBP9.12□□□□□ -0.95
RTN3-206ENST00000377819 TRAV2A0A0B4J234 112 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 M0R2P5 195 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 LHBP01229 141 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 IL11P20809 199 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 ZNF345Q14585 488 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 CD300LDQ6UXZ3 194 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 ZNF645Q8N7E2 425 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 SLC25A38Q96DW6 304 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 C7orf69Q9H7B7 122 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 JPT1Q9UK76 154 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 ELF5Q9UKW6 265 aaPredicted RBP9.11□□□□□ -0.95
RTN3-206ENST00000377819 IGHV1OR15-9A0A0B4J2B8 117 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 CD7P09564 240 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 LDLRAD2Q5SZI1 272 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 PCNX1Q96RV3 2341 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 PRSS22Q9GZN4 317 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 SEPSECSQ9HD40 501 aaKnown RBP9.11□□□□□ -0.95
RTN3-206ENST00000377819 IGHV1-69-2A0A0G2JMI3 117 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 H3BMM0 161 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 SPNP16150 400 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 SEC11AP67812 179 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 ISXQ2M1V0 245 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 UBE2WQ96B02 151 aa9.11□□□□□ -0.95
RTN3-206ENST00000377819 MARCH11A6NNE9 402 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FXYD1O00168 92 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 LIFP15018 202 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 CTAG1AP78358 180 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 C1QL3Q5VWW1 255 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 WNT2BQ93097 391 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 PRDM13Q9H4Q3 707 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 NHP2Q9NX24 153 aaKnown RBP9.1□□□□□ -0.95
RTN3-206ENST00000377819 ERG28Q9UKR5 140 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 ZNF257Q9Y2Q1 563 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 DSPPQ9NZW4 1301 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 CXorf51AA0A1B0GTR3 108 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 GFRA3O60609 400 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 NDUFA3O95167 84 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FER1L6-AS1Q8NA97 138 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 ASCL2Q99929 193 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 ABCA7Q8IZY2 2146 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 TCRBV5S2A0A599 114 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A10PA6NDY2 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A18PA6NE21 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A16PA6NEW6 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A20PA6NIJ5 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A8PA6NJQ4 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A7PA6NKC0 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A22PA8MWA6 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A12PA8MX19 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A5PA8MXJ8 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A23PA8MXZ1 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 EREGO14944 169 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A15PP0C7V4 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A13PP0C7W8 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A14PP0C7W9 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 FAM90A24PP0C7X0 464 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 ARL14EPLP0DKL9 152 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 C6orf226Q5I0X4 101 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms