RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TMED3Q9Y3Q3 217 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 PRRC2AP48634 2157 aaKnown RBP1.84□□□□□ -2.12
VPS54-202ENST00000354504 ZNF462Q96JM2 2506 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ITPR2Q14571 2701 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TRGV8A0A0C4DH27 118 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZFP92A6NM28 416 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TMEM178BH3BS89 294 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 GPR137BO60478 399 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZG16O60844 167 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CRYZL1O95825 349 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 IGKV1-16P04430 117 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CRYGCP07315 174 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNF728P0DKX0 622 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 AGAP20933 346 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 POLR2GP62487 172 aaKnown RBP eCLIP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ATXN7L3Q14CW9 347 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 RSU1Q15404 277 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 WDR25Q64LD2 544 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 THOC7Q6I9Y2 204 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 MKXQ8IYA7 352 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 C1orf174Q8IYL3 243 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR8H3Q8N146 312 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 DYNAPQ8N1N2 210 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TPRX1Q8N7U7 411 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNRF1Q8ND25 227 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR8H1Q8NGG4 311 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR10V1Q8NGI7 309 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR5L1Q8NGL2 311 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 NEK7Q8TDX7 302 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CASTOR1Q8WTX7 329 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 MARC2Q969Z3 335 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 URM1Q9BTM9 101 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 CXXC4Q9H2H0 198 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 C19orf12Q9NSK7 152 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 UQCC1Q9NVA1 299 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 C1orf123Q9NWV4 160 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 LAMP3Q9UQV4 416 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FAM96BQ9Y3D0 163 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 HIVEP2P31629 2446 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 SAA2-SAA4A0A096LPE2 208 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 A0A1B0GU03 582 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FAM24AA6NFZ4 105 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 LRRC30A6NM36 301 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ATP6V1G2-DDX39BF2Z307 99 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 L7N2F9 121 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 SNAPC5O75971 98 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 IGHG4P01861 327 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 SRP19P09132 144 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 SAA2P0DJI9 122 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNF44P15621 663 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CTRB1P17538 263 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 VDAC1P21796 283 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 NFYBP25208 207 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ATP6V0CP27449 155 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 RPL12P30050 165 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 FAUP35544 74 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 GNB2P62879 340 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 BSPH1Q075Z2 132 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FGL1Q08830 312 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TBC1D28Q2M2D7 210 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 KRTAP15-1Q3LI76 137 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 PHLDA2Q53GA4 152 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 GPR157Q5UAW9 335 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 MORN5Q5VZ52 161 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CTRB2Q6GPI1 263 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 P4HA3Q7Z4N8 544 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FAM185AQ8N0U4 392 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZCCHC24Q8N2G6 241 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR1J1Q8NGS3 322 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR52E5Q8NH55 327 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 AKR1E2Q96JD6 320 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FAM167A-AS1Q96KT0 104 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OR2V2Q96R30 315 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ARL6Q9H0F7 186 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 RBKSQ9H477 322 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TAF9BQ9HBM6 251 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 GPN1Q9HCN4 374 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNF701Q9NV72 531 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ASF1BQ9NVP2 202 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 IDI2-AS1Q9NZ38 188 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 B4GALT7Q9UBV7 327 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TP53TG3Q9ULZ0 132 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 WSB1Q9Y6I7 421 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 FXYD6-FXYD2A0A087WZ82 144 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 GAGE12JA6NER3 117 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 HS3ST1O14792 307 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 RBFOX2O43251 390 aaKnown RBP eCLIP1.83□□□□□ -2.12
VPS54-202ENST00000354504 IFNA7P01567 189 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 IFNA6P05013 189 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 DEFA4P12838 97 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 MC5RP33032 325 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CA7P43166 264 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 DYNLT3P51808 116 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 DLX1P56177 255 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 RUNX1Q01196 453 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TNFRSF9Q07011 255 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 PJVKQ0ZLH3 352 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 PRSS8Q16651 343 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 KRTCAP3Q53RY4 240 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 RPL39P5Q59GN2 51 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms