RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 SPTA1P02549 2419 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 MFAP4P55083 255 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 CTAG1AP78358 180 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 NPIPB3Q92617 1050 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 LINC00470Q9BZP3 86 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 FBXL15Q9H469 300 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 SELENOKQ9Y6D0 94 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 AMY1AP04745 511 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 ZNF883P0CG24 379 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 COX5BP10606 129 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 H1FOOQ8IZA3 346 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 MYOZ3Q8TDC0 251 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 DPH3P1Q9H4G8 78 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 JPT1Q9UK76 154 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 IGKV1D-33P01593 117 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 IGKV1-33P01594 117 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 GLRXP35754 106 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 SAXO1Q8IYX7 474 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 OR9G1Q8NH87 305 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 ZNF430Q9H8G1 570 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 NPIPB9F8W1W9 429 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 M0R3E3 92 aa8.62□□□□□ -1.03
CHD3-201ENST00000330494 HOXB1P14653 301 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 CDX1P47902 265 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 ALX4Q9H161 411 aaPredicted RBP8.62□□□□□ -1.03
CHD3-201ENST00000330494 LDLRAD4O15165 306 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 HSPE1P61604 102 aaKnown RBP8.61□□□□□ -1.03
CHD3-201ENST00000330494 RRN3P1Q2M238 152 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 C12orf54Q6X4T0 127 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 TCF19Q9Y242 345 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 NDUFA2O43678 99 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 OR13A1Q8NGR1 328 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 NDUFS8O00217 210 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 CD59P13987 128 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 CRYBB3P26998 211 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 HOXA6P31267 233 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 IBA57Q5T440 356 aaKnown RBP8.61□□□□□ -1.03
CHD3-201ENST00000330494 DUX5Q96PT3 197 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 NUDT16L1Q9BRJ7 211 aaKnown RBP8.61□□□□□ -1.03
CHD3-201ENST00000330494 PLXND1Q9Y4D7 1925 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 DLX1P56177 255 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 FGFBP3Q8TAT2 258 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 TMEM45BQ96B21 275 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 HSPB7Q9UBY9 170 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 IGKV3OR2-268A0A0C4DH90 116 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 IFI6P09912 130 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 CCL3L1P16619 93 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 FOXF2Q12947 444 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 WDFY1Q8IWB7 410 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 MBD3L1Q8WWY6 194 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 CHRNA10Q9GZZ6 450 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 F11RQ9Y624 299 aaKnown RBP8.61□□□□□ -1.03
CHD3-201ENST00000330494 TMEM56-RWDD3S4R434 201 aa8.61□□□□□ -1.03
CHD3-201ENST00000330494 ZNF729A6NN14 1252 aaPredicted RBP8.6□□□□□ -1.03
CHD3-201ENST00000330494 C12orf77C9JDV5 145 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 DNAJC4Q9NNZ3 241 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 INTS1Q8N201 2190 aaKnown RBP8.6□□□□□ -1.03
CHD3-201ENST00000330494 THSD7BQ9C0I4 1608 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 KIR2DL2P43627 348 aaPredicted RBP8.6□□□□□ -1.03
CHD3-201ENST00000330494 SERF2P84101 59 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 C17orf98A8MV24 154 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 SPACA3Q8IXA5 215 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 TSPAN13O95857 204 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 RNASE1P07998 156 aaKnown RBP8.6□□□□□ -1.03
CHD3-201ENST00000330494 AREGP15514 252 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 COL6A6A6NMZ7 2263 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 MUC21A0A0G2JKD1 596 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 MUC21A0A140T8X8 626 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 PQLC2LA1A4F0 135 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A10PA6NDY2 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A18PA6NE21 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A16PA6NEW6 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A20PA6NIJ5 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A8PA6NJQ4 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A7PA6NKC0 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A22PA8MWA6 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A12PA8MX19 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A5PA8MXJ8 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A23PA8MXZ1 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A15PP0C7V4 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A13PP0C7W8 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A14PP0C7W9 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM90A24PP0C7X0 464 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 ZNF124Q15973 351 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 C2orf68Q2NKX9 166 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 MUC21Q5SSG8 566 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 SAMD13Q5VXD3 122 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 RRHO14718 337 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 IL4P05112 153 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 KIAA1644Q3SXP7 199 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 COX19Q49B96 90 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 ZNF506Q5JVG8 444 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 ERASQ7Z444 233 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 LYZL4Q96KX0 146 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 KLK15Q9H2R5 256 aa8.6□□□□□ -1.03
CHD3-201ENST00000330494 FAM74A4Q5TZK3 123 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 FAM168AQ92567 244 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 KLHDC3Q9BQ90 382 aa8.59□□□□□ -1.03
CHD3-201ENST00000330494 NPDC1Q9NQX5 325 aaPredicted RBP8.59□□□□□ -1.03
CHD3-201ENST00000330494 TUBD1Q9UJT1 453 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms