RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 PATZ1Q9HBE1 687 aaKnown RBP13.26□□□□□ -0.29
USHBP1-202ENST00000324554 DVL1O14640 695 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 RRHO14718 337 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 LHBP01229 141 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 UTF1Q5T230 341 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 PGPEP1LA6NFU8 196 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 SLC31A2O15432 143 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 SPRY3O43610 288 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 NDUFB4O95168 129 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 GLRXP35754 106 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 CST9LP1Q5W188 147 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 VHLLQ6RSH7 139 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 C1orf229Q6ZS94 237 aaPredicted RBP13.25□□□□□ -0.29
USHBP1-202ENST00000324554 ZNF114Q8NC26 417 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 OR52E5Q8NH55 327 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 CALYQ9NYX4 217 aa13.25□□□□□ -0.29
USHBP1-202ENST00000324554 ATRXP46100 2492 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 TRAV3A0A0B4J244 114 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 IFNA10P01566 189 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 TYMSP04818 313 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 SELLP14151 372 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 SRP14P37108 136 aaKnown RBP13.24□□□□□ -0.29
USHBP1-202ENST00000324554 VDAC2P45880 294 aaPredicted RBP13.24□□□□□ -0.29
USHBP1-202ENST00000324554 PDLIM4P50479 330 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 RELBQ01201 579 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 PDLIM3Q53GG5 364 aaPredicted RBP13.24□□□□□ -0.29
USHBP1-202ENST00000324554 FAM201AQ5SY85 155 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 C1orf185Q5T7R7 199 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 TREML4Q6UXN2 200 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 ZNF600Q6ZNG1 722 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 ITLN1Q8WWA0 313 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 S1PR3Q99500 378 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 TSTD3H0UI37 97 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 ERVK-16P61578 105 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 DDB2Q92466 427 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 SNRNP40Q96DI7 357 aaKnown RBP13.24□□□□□ -0.29
USHBP1-202ENST00000324554 SPTA1P02549 2419 aa13.24□□□□□ -0.29
USHBP1-202ENST00000324554 IGLV3-9A0A075B6K5 115 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 A0A087X0M5 115 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 A0A1B0GX30 115 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 PRSS46E5RG02 174 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 PDE6DO43924 150 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 C1QTNF9P0C862 333 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 CGB3P0DN86 165 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 CGB7P0DN87 165 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 COL8A2P25067 703 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 RPP30P78346 268 aaKnown RBP13.23□□□□□ -0.29
USHBP1-202ENST00000324554 FAM78BQ5VT40 261 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 RAB1CQ92928 201 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 LEAP2Q969E1 77 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 ACY3Q96HD9 319 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 HEYLQ9NQ87 328 aaPredicted RBP13.23□□□□□ -0.29
USHBP1-202ENST00000324554 TMEM140Q9NV12 185 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 KALRNO60229 2985 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 A0A1W2PPV4 95 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 PAX1P15863 534 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 IL3RAP26951 378 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 C17orf58Q2M2W7 97 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 DOLPP1Q86YN1 238 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 FAM57AQ8TBR7 257 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 MGST2Q99735 147 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 TMEM204Q9BSN7 226 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 MS4A5Q9H3V2 200 aa13.23□□□□□ -0.29
USHBP1-202ENST00000324554 TRBV20OR9-2A0A075B6H5 130 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 TMPRSS2O15393 492 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 ARL14EPLP0DKL9 152 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 KIR2DS2P43631 304 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 TMEM249Q2WGJ8 235 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 KRTCAP3Q53RY4 240 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 C22orf34Q6ZV56 151 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 REC114Q7Z4M0 266 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 ABHD12Q8N2K0 398 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 SDSLQ96GA7 329 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 DSCAMO60469 2012 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 MPDU1O75352 247 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 CT45A1Q5HYN5 189 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 MIC13Q5XKP0 118 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 DUX4L9Q6RFH8 374 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-202ENST00000324554 GFRALQ6UXV0 394 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 CT45A3Q8NHU0 189 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 KCNIP2Q9NS61 270 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 ICE1Q9Y2F5 2266 aa13.22□□□□□ -0.29
USHBP1-202ENST00000324554 OPRK1P41145 380 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 GATA4P43694 442 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 RAB7AP51149 207 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 TDGF1P3P51864 188 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 TMPRSS3P57727 454 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 FAM27E3Q08E93 113 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 C3orf36Q3SXR2 165 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 KCNIP4Q6PIL6 250 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 ZNF664Q8N3J9 261 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 OR4S2Q8NH73 311 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 C1orf159Q96HA4 380 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 GGTLC1Q9BX51 225 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 NCOR1P1Q9H4R4 102 aa13.21□□□□□ -0.29
USHBP1-202ENST00000324554 SAA2-SAA4A0A096LPE2 208 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 ITGB1BP1O14713 200 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 SOX15O60248 233 aa13.21□□□□□ -0.3
USHBP1-202ENST00000324554 SAA2P0DJI9 122 aaPredicted RBP13.21□□□□□ -0.3
USHBP1-202ENST00000324554 RPL15P61313 204 aaKnown RBP13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms