RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GATAD1Q8WUU5 269 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 VPS25Q9BRG1 176 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 NDUFAF3Q9BU61 184 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 IDI2-AS1Q9NZ38 188 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 IL36BQ9NZH7 164 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 WDR83OSQ9Y284 106 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 GOLT1BQ9Y3E0 138 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 TAS2R60P59551 318 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 GNB2P62879 340 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 TMEM14EPQ6UXP3 125 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 HS3ST6Q96QI5 342 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 FER1L5A0AVI2 2057 aa12.37□□□□□ -0.43
TCOF1-201ENST00000323668 C1QTNF9P0C862 333 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 COX7A1P24310 79 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 SRIP30626 198 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 ARSJQ5FYB0 599 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-201ENST00000323668 FAM90A2PQ658T7 463 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 A8MWL6 223 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 RNF224P0DH78 156 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 CD99P14209 185 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 DOLPP1Q86YN1 238 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 IMMP2LQ96T52 175 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 AMMECR1Q9Y4X0 333 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-201ENST00000323668 IGKV1-6A0A0C4DH72 117 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 DLL1O00548 723 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 CGAP01215 116 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 AMBPP02760 352 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 TMEM11P17152 192 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 ATP5IP56385 69 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-201ENST00000323668 Q0VFX4 171 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 C20orf204Q6ZNR8 217 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 COLCA1Q6ZS62 124 aa12.36□□□□□ -0.43
TCOF1-201ENST00000323668 YTHDF2Q9Y5A9 579 aaKnown RBP12.36□□□□□ -0.43
TCOF1-201ENST00000323668 SPAARA0A1B0GVQ0 90 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 FOXI3A8MTJ6 420 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-201ENST00000323668 ZNF714Q96N38 554 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 KLF2Q9Y5W3 355 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PPIAL4EA0A075B759 164 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 C9orf172C9J069 976 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PPIAL4DF5H284 164 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 ZNF883P0CG24 379 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PPIAL4FP0DN26 164 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 VWA1Q6PCB0 445 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PPIAL4AQ9Y536 164 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 INSIG2Q9Y5U4 225 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 TRGV8A0A0C4DH27 118 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PLAUP00749 431 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 LYPD6BQ8NI32 183 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 GSX1Q9H4S2 264 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-201ENST00000323668 ASCL3Q9NQ33 180 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 LNP1A1A4G5 178 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 LILRA1O75019 489 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 HYPMO75409 117 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 SPATA45Q537H7 98 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 LOXL4Q96JB6 756 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 ZNF430Q9H8G1 570 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-201ENST00000323668 UQCR10Q9UDW1 63 aa12.35□□□□□ -0.43
TCOF1-201ENST00000323668 PSPNO60542 156 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 IGHV2-5P01817 119 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 ARL16Q0P5N6 197 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 RNF24Q9Y225 148 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 C16orf97H3BN30 126 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 AMY1AP04745 511 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 APELAP0DMC3 54 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 IGFBP2P18065 325 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 ACSF3Q4G176 576 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-201ENST00000323668 GCSAMLQ5JQS6 135 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 PROK2Q9HC23 129 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 RPL30P62888 115 aaKnown RBP12.34□□□□□ -0.43
TCOF1-201ENST00000323668 OR4A47Q6IF82 309 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 WDR82Q6UXN9 313 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 NHLRC2Q8NBF2 726 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 ZCCHC14Q8WYQ9 949 aaKnown RBP12.34□□□□□ -0.43
TCOF1-201ENST00000323668 GNB4Q9HAV0 340 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 PRDM6Q9NQX0 595 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 PGPEP1LA6NFU8 196 aa12.34□□□□□ -0.43
TCOF1-201ENST00000323668 C1orf162Q8NEQ5 155 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-201ENST00000323668 PGPA6NDG6 321 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 PMCHL1Q16048 86 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 SSC4DQ8WTU2 575 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 GLRXP35754 106 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 RND2P52198 227 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 ZNF137PP52743 207 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 NHLH1Q02575 133 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 RASL11BQ9BPW5 248 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 TRAV9-1A0A075B6T8 112 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 MC5RP33032 325 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 PAX9P55771 341 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 Q6P435 159 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 ASCL5Q7RTU5 278 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 MAP1LC3CQ9BXW4 147 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 ONECUT1Q9UBC0 465 aa12.33□□□□□ -0.44
TCOF1-201ENST00000323668 IL18BPO95998 194 aa12.32□□□□□ -0.44
TCOF1-201ENST00000323668 TFF1P04155 84 aa12.32□□□□□ -0.44
TCOF1-201ENST00000323668 OR5AL1P0C617 328 aa12.32□□□□□ -0.44
TCOF1-201ENST00000323668 DUTP33316 252 aaKnown RBP12.32□□□□□ -0.44
TCOF1-201ENST00000323668 RPL27AP46776 148 aaKnown RBP12.32□□□□□ -0.44
TCOF1-201ENST00000323668 TNFSF10P50591 281 aa12.32□□□□□ -0.44
TCOF1-201ENST00000323668 FDCSPQ8NFU4 85 aa12.32□□□□□ -0.44
TCOF1-201ENST00000323668 IGHV3-21A0A0B4J1V1 117 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms