RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 GAGE2EQ4V326 116 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 WDR82Q6UXN9 313 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 GAGE2DQ9UEU5 116 aa7.5□□□□□ -1.21
USF3-201ENST00000316407 DMRTC2Q8IXT2 367 aaPredicted RBP7.49□□□□□ -1.21
USF3-201ENST00000316407 EPDR1Q9UM22 224 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 HIST1H4AP62805 103 aaKnown RBP7.49□□□□□ -1.21
USF3-201ENST00000316407 VEGFBP49765 207 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 ABHD12Q8N2K0 398 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 TOMM7Q9P0U1 55 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 ODAMA1E959 279 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 VN1R4Q7Z5H5 301 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 MARVELD3Q96A59 401 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 IGLV3-16A0A075B6K0 115 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 IGHV3OR16-8A0A075B7F1 116 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 LOC390937A0A1W2PQ73 354 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 RPL27AP46776 148 aaKnown RBP7.49□□□□□ -1.21
USF3-201ENST00000316407 UNQ5815/PRO19632Q6UWF5 114 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 DPH3Q96FX2 82 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 COL16A1Q07092 1604 aaPredicted RBP7.49□□□□□ -1.21
USF3-201ENST00000316407 C9orf172C9J069 976 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 TNFSF14O43557 240 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 C17orf99Q6UX52 265 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 FGFRL1Q8N441 504 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 DEFB104AQ8WTQ1 72 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 IL36BQ9NZH7 164 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 A0A087X0K7 114 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 SPINK8P0C7L1 97 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 CLDND2Q8NHS1 167 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 S4R3C0 116 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 ATP5G3P48201 142 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 ZNF562Q6V9R5 426 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 GPR132Q9UNW8 380 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 SFTPCP11686 197 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 GNG5P63218 68 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 LSM6P62312 80 aaKnown RBP7.49□□□□□ -1.21
USF3-201ENST00000316407 C1QL4Q86Z23 238 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 AMELYQ99218 206 aa7.49□□□□□ -1.21
USF3-201ENST00000316407 HOXA3O43365 443 aaPredicted RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 GCHFRP30047 84 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 TBR1Q16650 682 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PTCRAQ6ISU1 281 aaPredicted RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 RPRMQ9NS64 109 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 HCFC1P51610 2035 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 IGHV3-23P01764 117 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 CEACAM1P13688 526 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 POC1AQ8NBT0 407 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 OR51G1Q8NGK1 321 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 VCX2Q9H322 139 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 FSCN3Q9NQT6 498 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 MPC1Q9Y5U8 109 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PGLYRP1O75594 196 aaPredicted RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 CD8AP01732 235 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 FAM71F2Q6NXP2 309 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 OR2K2Q8NGT1 345 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PEX7O00628 323 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 LINC00596Q86U02 117 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 TIMM23BQ5SRD1 257 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 GUSBP11Q6P575 273 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 KCNMB2Q9Y691 235 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 A0A087WWC5 75 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 MRPS18AQ9NVS2 196 aaKnown RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 PRB3Q04118 309 aaPredicted RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 C10orf35Q96D05 121 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 LMO7DNF2Z398 122 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 NOVP48745 357 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 DCAF10Q5QP82 559 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PRDM14Q9GZV8 571 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PLXNA2O75051 1894 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 PLXNA3P51805 1871 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 C9JCJ5 164 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 SRP19P09132 144 aaKnown RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 ZNF826PQ6ZT77 177 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 SYNGR3O43761 229 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 BGLAPP02818 100 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 BRCA1P38398 1863 aaKnown RBP7.48□□□□□ -1.21
USF3-201ENST00000316407 TNFRSF6BO95407 300 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 DIRC2Q96SL1 478 aa7.48□□□□□ -1.21
USF3-201ENST00000316407 GAGE12BA1L429 117 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 IGKV1D-16P01601 117 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 C2orf88Q9BSF0 95 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TRAV9-2A0A087WT02 112 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TRBV5-3A0A0A0MS03 114 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 GABRG2P18507 467 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 FOXL2P58012 376 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 KCNMB1Q16558 191 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TRAV2A0A0B4J234 112 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 OR2H2O95918 312 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TXNDC17Q9BRA2 123 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 CLEC1BQ9P126 229 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 TRAV24A0A0B4J272 114 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 A8MWV9 139 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 AMBPP02760 352 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 SCN10AQ9Y5Y9 1956 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 A0A1B0GUT8 65 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 C8orf88P0DMB2 117 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 EBLN2Q6P2I7 272 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 ELSPBP1Q96BH3 223 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 FAM60AQ9NP50 221 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 FXYD7P58549 80 aa7.47□□□□□ -1.21
USF3-201ENST00000316407 GATAD1Q8WUU5 269 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms