RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 A0A1W2PPV9 198 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 SRSF6Q13247 344 aaKnown RBP11.86□□□□□ -0.51
CSPG4-201ENST00000308508 CACNA1IQ9P0X4 2223 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 PCSK4Q6UW60 755 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 BHLHA9Q7RTU4 235 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 RPRMQ9NS64 109 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM106BQ9NUM4 274 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 CLEC2AQ6UVW9 174 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 FAM19A2Q8N3H0 131 aa11.86□□□□□ -0.51
CSPG4-201ENST00000308508 HOXA3O43365 443 aaPredicted RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 KIR3DL3Q8N743 410 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 PHLDA1Q8WV24 401 aaPredicted RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM186Q96B77 213 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 YAE1D1Q9NRH1 226 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 QSER1Q2KHR3 1735 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 TRAV24A0A0B4J272 114 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 ABHD12Q8N2K0 398 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 IMMP2LQ96T52 175 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 M0R381 172 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 SNAI3Q3KNW1 292 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 FAM181AQ8N9Y4 354 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 PRR7Q8TB68 274 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 NRN1Q9NPD7 142 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 NHP2Q9NX24 153 aaKnown RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 POLR2AP24928 1970 aaKnown RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 TRAV21A0A0B4J279 112 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 ZNF585BQ52M93 769 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 RIPPLY2Q5TAB7 128 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 FAM71F2Q6NXP2 309 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 CIARTQ8N365 385 aaPredicted RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 TTTY12Q9BZ98 90 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 R4GN57 208 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 SRP19P09132 144 aaKnown RBP11.85□□□□□ -0.51
CSPG4-201ENST00000308508 ICAM4Q14773 271 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 ALPK2Q86TB3 2170 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 PTPRFP10586 1907 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 PMS2CLQ68D20 193 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 UNQ9370/PRO34162Q6UXP9 181 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 KCNK17Q96T54 332 aa11.85□□□□□ -0.51
CSPG4-201ENST00000308508 IGHV5-10-1A0A0J9YXX1 117 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 NPIPB11E5RHQ5 1161 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 NBEAP1P0C6P0 100 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SFTPCP11686 197 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 LEPP41159 167 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 RNF182Q8N6D2 247 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 A8MWV9 139 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 NUTF2P61970 127 aaKnown RBP11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SEC11AP67812 179 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 Q5BKY6 102 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 DEFB124Q8NES8 71 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 HIGD1CA8MV81 97 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 IL6RP08887 468 aaPredicted RBP11.84□□□□□ -0.51
CSPG4-201ENST00000308508 NPIPB3Q92617 1050 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 PLA2G2FQ9BZM2 168 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 TRAV9-2A0A087WT02 112 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 IGKV1D-16P01601 117 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SRSF4Q08170 494 aaKnown RBP11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SLC25A47Q6Q0C1 308 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 MPDZO75970 2070 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 RGPD3A6NKT7 1758 aaPredicted RBP11.84□□□□□ -0.51
CSPG4-201ENST00000308508 TRAV12-3A0A0B4J271 114 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 CTSSP25774 331 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM92Q6UXU6 159 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 TMEM170AQ8WVE7 144 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SLC25A2Q9BXI2 301 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SLC25A15Q9Y619 301 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 STRCQ7RTU9 1775 aa11.84□□□□□ -0.51
CSPG4-201ENST00000308508 SCO2A0A1W2PP80 73 aa11.83□□□□□ -0.51
CSPG4-201ENST00000308508 H3BTX0 84 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 C1orf185Q5T7R7 199 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 GPHA2Q96T91 129 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 CYSLTR1Q9Y271 337 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 SERF1AO75920 110 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 CGAP01215 116 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 C9JCJ5 164 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 NKX2-8O15522 239 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 PLNP26678 52 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 GAGE2BQ13066 116 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 GAGE2EQ4V326 116 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 GAGE2DQ9UEU5 116 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 FREM3P0C091 2139 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 GAGE13Q4V321 117 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 C1orf210Q8IVY1 113 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 ITLN1Q8WWA0 313 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 G6PC2Q9NQR9 355 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 DTX4Q9Y2E6 619 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 UBE2CO00762 179 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 DPM2O94777 84 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 OR9G1Q8NH87 305 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 TMEM74BQ9NUR3 256 aa11.83□□□□□ -0.52
CSPG4-201ENST00000308508 FER1L5A0AVI2 2057 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 SPEM2Q0P670 501 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 EGR1P18146 543 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 OR10J3Q5JRS4 329 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 SDF2L1Q9HCN8 221 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 MBD1Q9UIS9 605 aaPredicted RBP11.82□□□□□ -0.52
CSPG4-201ENST00000308508 IL11P20809 199 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 LHFPL6Q9Y693 200 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 GBF1Q92538 1859 aa11.82□□□□□ -0.52
CSPG4-201ENST00000308508 ZIC3O60481 467 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms