RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 FSCN3Q9NQT6 498 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 LINC01549A6NIU2 74 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 MOSPD3O75425 235 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 FADS6Q8N9I5 356 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 TMEM52Q8NDY8 209 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 OSR1Q8TAX0 266 aaPredicted RBP6.53□□□□□ -1.36
SF3B3-201ENST00000302516 SRSF12Q8WXF0 261 aaKnown RBP6.53□□□□□ -1.36
SF3B3-201ENST00000302516 NABP2Q9BQ15 211 aa6.53□□□□□ -1.36
SF3B3-201ENST00000302516 CRYBB3P26998 211 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 NDUFAF3Q9BU61 184 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 RTN4RQ9BZR6 473 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 GRIFINA4D1Z8 144 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 FXYD3Q14802 87 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM170AQ8WVE7 144 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 NPIPB11E5RHQ5 1161 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 PEX7O00628 323 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 SRP19P09132 144 aaKnown RBP6.52□□□□□ -1.37
SF3B3-201ENST00000302516 UNC119Q13432 240 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 PLXNB3Q9ULL4 1909 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 DOCK7Q96N67 2140 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 A0A1B0GTI1 187 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 ZG16O60844 167 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 GPX1P07203 203 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 IL11P20809 199 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 GPR6P46095 362 aaPredicted RBP6.52□□□□□ -1.37
SF3B3-201ENST00000302516 ZP1P60852 638 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 RNFT1Q5M7Z0 435 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 HOXA5P20719 270 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 UCP1P25874 307 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 SNAI3Q3KNW1 292 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 PCSK4Q6UW60 755 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 FBLN5Q9UBX5 448 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 DNM1P46Q6ZS02 220 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 LINC00305Q7Z4B0 112 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 LINC00469Q8N7U9 141 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 RLFQ13129 1914 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 A0A0J9YW62 118 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 ZNF205O95201 554 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 SMRP1Q8NCR6 262 aa6.52□□□□□ -1.37
SF3B3-201ENST00000302516 CHCHD1Q96BP2 118 aaKnown RBP6.52□□□□□ -1.37
SF3B3-201ENST00000302516 IGHV4-34P06331 123 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 CTSSP25774 331 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ZNF324BQ6AW86 544 aaPredicted RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 GTF3AQ92664 365 aaKnown RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 TRBV23-1A0A0A0MS06 115 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 hCG_38984A0A1B0GV85 526 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 F8VVB4 439 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 F8VWA3 439 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 PIN1P1O15428 100 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 HTN1P15515 57 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 MDKP21741 143 aaPredicted RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 LINC01590Q5TEZ4 76 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ORMDL3Q8N138 153 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 C5orf30Q96GV9 206 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 GNB1LQ9BYB4 327 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 PIMREGQ9BSJ6 248 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 SDK2Q58EX2 2172 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 TRBV20OR9-2A0A075B6H5 130 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 A0A1W2PP11 408 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 J3KRW8 73 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 APELAP0DMC3 54 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 REG1BP48304 166 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 RASL11AQ6T310 242 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ATP5L2Q7Z4Y8 100 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 TTC9CQ8N5M4 171 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 LOXL4Q96JB6 756 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 CCL13Q99616 98 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 SLC25A2Q9BXI2 301 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 PRDM13Q9H4Q3 707 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 DDB2Q92466 427 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 NPFFO15130 113 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ADRA2AP08913 450 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 SMIM10L1P0DMW3 83 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 FCGR2BP31994 310 aaPredicted RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 FHITP49789 147 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 PRSS12P56730 875 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 MBNL2Q5VZF2 373 aaKnown RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 SMIM10Q96HG1 83 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM101Q96IK0 257 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ELOVL5Q9NYP7 299 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM50AO95807 157 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 SEC11AP67812 179 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 GOLT1AQ6ZVE7 132 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 RTN4RL2Q86UN3 420 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 DRAM1Q8N682 238 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 C1orf162Q8NEQ5 155 aaPredicted RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 IL6RP08887 468 aaPredicted RBP6.51□□□□□ -1.37
SF3B3-201ENST00000302516 BIVMQ86UB2 503 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 C18orf12Q96KH6 178 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 ST20Q9HBF5 79 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 PLXNA4Q9HCM2 1894 aa6.51□□□□□ -1.37
SF3B3-201ENST00000302516 IGKV1D-42A0A075B6H8 117 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 RRHO14718 337 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 SSTR5P35346 364 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 ZNF56Q15929 161 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 SRSF7Q16629 238 aaKnown RBP eCLIP6.5□□□□□ -1.37
SF3B3-201ENST00000302516 CRISPLD2Q9H0B8 497 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 SLC17A3O00476 420 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 DMRTA1Q5VZB9 504 aa6.5□□□□□ -1.37
SF3B3-201ENST00000302516 SP7Q8TDD2 431 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms