RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 ARSJQ5FYB0 599 aaPredicted RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 SSMEM1Q8WWF3 244 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 SFRP2Q96HF1 295 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 RBM14Q96PK6 669 aaKnown RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 A0A0U1RQK1 487 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 ZNF320A2RRD8 509 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 MBD3L4A6NDZ8 208 aaPredicted RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 MBD3L3A6NE82 208 aaPredicted RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 MBD3L5A6NJ08 208 aaPredicted RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 M0R1B8 84 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 SPRY3O43610 288 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 SELLP14151 372 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 RPL15P61313 204 aaKnown RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 FAM201AQ5SY85 155 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 PIP4P1Q86T03 277 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 MBD3L2Q8NHZ7 208 aaPredicted RBP12.55□□□□□ -0.4
DDX56-201ENST00000258772 ITLN1Q8WWA0 313 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 BTF3L4Q96K17 158 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 TMEM204Q9BSN7 226 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 NCOR1P1Q9H4R4 102 aa12.55□□□□□ -0.4
DDX56-201ENST00000258772 ZFHX4Q86UP3 3567 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 A0A087X0M5 115 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 SAA2-SAA4A0A096LPE2 208 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 A0A1B0GX30 115 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 SAA2P0DJI9 122 aaPredicted RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 GLRXP35754 106 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 CNN1P51911 297 aaKnown RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 KLF3P57682 345 aaPredicted RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 HSPE1P61604 102 aaKnown RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 OR4A47Q6IF82 309 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 TEPPQ6URK8 271 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 REC114Q7Z4M0 266 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 SCO2A0A1W2PP80 73 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 GCGP01275 180 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 IL6RP08887 468 aaPredicted RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 PAX1P15863 534 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 UNQ6494/PRO21346Q6UXR6 183 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 SGMS2Q8NHU3 365 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 SEPSECSQ9HD40 501 aaKnown RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 TMEM14BQ9NUH8 114 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 FOXA2Q9Y261 457 aaPredicted RBP12.54□□□□□ -0.4
DDX56-201ENST00000258772 TRAPPC1Q9Y5R8 145 aa12.54□□□□□ -0.4
DDX56-201ENST00000258772 TNCP24821 2201 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 KBTBD11-OT1A0A1B0GTJ5 212 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 MDFIC2A0A1B0GVS7 189 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 NPY1RP25929 384 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 EFNB3Q15768 340 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 DEFB109BQ30KR1 87 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 TIMM23BQ5SRD1 257 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 CFAP161Q6P656 301 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 VHLLQ6RSH7 139 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 ZNF474Q6S9Z5 364 aaPredicted RBP12.53□□□□□ -0.4
DDX56-201ENST00000258772 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.53□□□□□ -0.4
DDX56-201ENST00000258772 SLC24A4Q8NFF2 622 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 TMEM18Q96B42 140 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 YTHDF2Q9Y5A9 579 aaKnown RBP12.53□□□□□ -0.4
DDX56-201ENST00000258772 YLPM1P49750 1951 aaKnown RBP12.53□□□□□ -0.4
DDX56-201ENST00000258772 FTH1P19P0C7X4 201 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 GCHFRP30047 84 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 STPG3Q8N7X2 389 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 DEFB124Q8NES8 71 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 OCC1Q8TAD7 63 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 FAM222BQ8WU58 562 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 RAB9BQ9NP90 201 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 ELOVL5Q9NYP7 299 aa12.53□□□□□ -0.4
DDX56-201ENST00000258772 SPAARA0A1B0GVQ0 90 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 CA2P00918 260 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 THBS3P49746 956 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 RHOBP62745 196 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 MRPS11P82912 194 aaKnown RBP12.52□□□□□ -0.41
DDX56-201ENST00000258772 SPATA31B1PQ5VZV4 182 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 ENY2Q9NPA8 101 aa12.52□□□□□ -0.41
DDX56-201ENST00000258772 CACNA1HO95180 2353 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 IGLV3-9A0A075B6K5 115 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 MKRN2OSH3BPM6 223 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 GATA4P43694 442 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 RPL29P47914 159 aaKnown RBP12.51□□□□□ -0.41
DDX56-201ENST00000258772 RAB31Q13636 194 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 DUX4L9Q6RFH8 374 aaPredicted RBP12.51□□□□□ -0.41
DDX56-201ENST00000258772 LYG1Q8N1E2 194 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 ZNF664Q8N3J9 261 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 IDI2-AS1Q9NZ38 188 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 PLCE1Q9P212 2302 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 ZNF705GA8MUZ8 300 aaPredicted RBP12.51□□□□□ -0.41
DDX56-201ENST00000258772 FOXH1O75593 365 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 TIMP3P35625 211 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 RPL31P62899 125 aaKnown RBP12.51□□□□□ -0.41
DDX56-201ENST00000258772 TEX38Q6PEX7 206 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 GBGT1Q8N5D6 347 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 OR10G8Q8NGN5 311 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 ADTRPQ96IZ2 230 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 RNF7Q9UBF6 113 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 ASPMQ8IZT6 3477 aa12.51□□□□□ -0.41
DDX56-201ENST00000258772 TRGV10A0A0A0MS01 117 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 MYOD1P15172 320 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 HNF1AP20823 631 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 COL8A2P25067 703 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 CCKARP32238 428 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 POU2AF1Q16633 256 aa12.5□□□□□ -0.41
DDX56-201ENST00000258772 ZNF439Q8NDP4 499 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms