RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FAM223AQ8IWN6 122 aa17.6■□□□□ 0.41
LSM4-201ENST00000252816 H3BMQ9 156 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 OR2J3O76001 311 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 CD3DP04234 171 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 UCP3P55916 312 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 OR2B8PP59922 312 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 KLF5Q13887 457 aaPredicted RBP17.59■□□□□ 0.41
LSM4-201ENST00000252816 NECAP1Q8NC96 275 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 DNAH9Q9NYC9 4486 aa17.59■□□□□ 0.41
LSM4-201ENST00000252816 DPPA5A6NC42 116 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 CRYGCP07315 174 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 PSMB6P28072 239 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 ATP5G2Q06055 141 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 EXOSC2Q13868 293 aaKnown RBP17.58■□□□□ 0.4
LSM4-201ENST00000252816 RNASE10Q5GAN6 216 aaKnown RBP17.58■□□□□ 0.4
LSM4-201ENST00000252816 LPCAT3Q6P1A2 487 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 OR4D10Q8NGI6 311 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 C15orf40Q8WUR7 153 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 ISOC1Q96CN7 298 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 FANCD2OSQ96PS1 177 aa17.58■□□□□ 0.4
LSM4-201ENST00000252816 ZNF256Q9Y2P7 627 aaPredicted RBP17.58■□□□□ 0.4
LSM4-201ENST00000252816 COL7A1Q02388 2944 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 MARCH11A6NNE9 402 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 KRASP01116 189 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 REG1AP05451 166 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 CTRB1P17538 263 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 ERVK-16P61578 105 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 C15orf32Q32M92 178 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 CTRB2Q6GPI1 263 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 TBC1D26Q86UD7 250 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 LHFPL1Q86WI0 220 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 SLC38A6Q8IZM9 456 aa17.57■□□□□ 0.4
LSM4-201ENST00000252816 LSM4Q9Y4Z0 139 aaKnown RBP17.57■□□□□ 0.4
LSM4-201ENST00000252816 SORL1Q92673 2214 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 GABARAPH6UMI1 98 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 IFNA6P05013 189 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 G6PCP35575 357 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 SYNJ2BPP57105 145 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 TMEM229BQ8NBD8 167 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 OR4C12Q96R67 309 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 COMMD5Q9GZQ3 224 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 SLIRPQ9GZT3 109 aaKnown RBP17.56■□□□□ 0.4
LSM4-201ENST00000252816 FBXL7Q9UJT9 491 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 CEPT1Q9Y6K0 416 aa17.56■□□□□ 0.4
LSM4-201ENST00000252816 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.55■□□□□ 0.4
LSM4-201ENST00000252816 IGLC7A0M8Q6 106 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 BMPR1BO00238 502 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 NOL3O60936 208 aaKnown RBP17.55■□□□□ 0.4
LSM4-201ENST00000252816 CD74P04233 296 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 FGF2P09038 288 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 TBPP20226 339 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 KLK9Q2XQG4 91 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 HAPLN4Q86UW8 402 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 ARRDC1Q8N5I2 433 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 DIRAS2Q96HU8 199 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 ELOVL1Q9BW60 279 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 KLK9Q9UKQ9 250 aa17.55■□□□□ 0.4
LSM4-201ENST00000252816 NDUFB8O95169 186 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 LY86O95711 162 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 SPNP16150 400 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 PI3P19957 117 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 S100GP29377 79 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 IL34Q6ZMJ4 242 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 CADM3Q8N126 398 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 OR10W1Q8NGF6 305 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 OR9G4Q8NGQ1 327 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 QTRT1Q9BXR0 403 aaKnown RBP17.54■□□□□ 0.4
LSM4-201ENST00000252816 C6orf62Q9GZU0 229 aaPredicted RBP17.54■□□□□ 0.4
LSM4-201ENST00000252816 FAM212BQ9NTI7 297 aaPredicted RBP17.54■□□□□ 0.4
LSM4-201ENST00000252816 NSG2Q9Y328 171 aa17.54■□□□□ 0.4
LSM4-201ENST00000252816 TEX50A0A1B0GTY4 177 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 IGKV1-39P01597 117 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 IGKV1D-39P04432 117 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 PGAM2P15259 253 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 TAS2R19P59542 299 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 MRPS10P82664 201 aaKnown RBP17.53■□□□□ 0.4
LSM4-201ENST00000252816 RPEL1Q2QD12 228 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 STEAP1BQ6NZ63 245 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 OR6Q1Q8NGQ2 317 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 SMIM4Q8WVI0 70 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 B9D2Q9BPU9 175 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 DMRT1Q9Y5R6 373 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 S4R3C0 116 aa17.53■□□□□ 0.4
LSM4-201ENST00000252816 IGLV11-55A0A075B6I3 123 aa17.52■□□□□ 0.4
LSM4-201ENST00000252816 RAB3DO95716 219 aa17.52■□□□□ 0.4
LSM4-201ENST00000252816 DHFRP00374 187 aa17.52■□□□□ 0.4
LSM4-201ENST00000252816 IGHV3-23P01764 117 aa17.52■□□□□ 0.4
LSM4-201ENST00000252816 SSBP1Q04837 148 aaKnown RBP17.52■□□□□ 0.4
LSM4-201ENST00000252816 DCTN2Q13561 401 aaKnown RBP17.52■□□□□ 0.4
LSM4-201ENST00000252816 IL18Q14116 193 aa17.52■□□□□ 0.4
LSM4-201ENST00000252816 SRSF8Q9BRL6 282 aaKnown RBP17.52■□□□□ 0.4
LSM4-201ENST00000252816 PPP5D1E7EU14 171 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 CTDSPLO15194 276 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 IGLV1-51P01701 117 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 TRAPPC2P0DI81 140 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 TRAPPC2BP0DI82 140 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 DEFA4P12838 97 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 PTBP1P26599 531 aaKnown RBP eCLIP17.51■□□□□ 0.39
LSM4-201ENST00000252816 PPP5CP53041 499 aa17.51■□□□□ 0.39
LSM4-201ENST00000252816 RND3P61587 244 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms