RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TMEM170AQ8WVE7 144 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 SIGLEC12Q96PQ1 595 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 SPXQ9BT56 116 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 GAGE12BA1L429 117 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 C4orf51C9J302 202 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 VSIG10L2P0DP72 767 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 COX11Q9Y6N1 276 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 PSME4Q14997 1843 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 DANCRP0C864 163 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 KLK13Q9UKR3 277 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 GDF9O60383 454 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 FGF8P55075 233 aaPredicted RBP10.87□□□□□ -0.67
USP40-201ENST00000251722 SPACA3Q8IXA5 215 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 OR4X2Q8NGF9 303 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 DPM3Q9P2X0 92 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 A0A0G2JMM0 328 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 A0A1W2PPB8 328 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 KIR3DP1A8MWS1 328 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 H3BUT2 72 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 C20orf204Q6ZNR8 217 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 CENPVQ7Z7K6 275 aaPredicted RBP10.87□□□□□ -0.67
USP40-201ENST00000251722 SPANXDQ9BXN6 97 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 NEUROG3Q9Y4Z2 214 aa10.87□□□□□ -0.67
USP40-201ENST00000251722 SIPA1L1O43166 1804 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 MED19A0JLT2 244 aaPredicted RBP10.86□□□□□ -0.67
USP40-201ENST00000251722 C17orf51A8MQB3 221 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 IQCF6A8MYZ5 107 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 SRSF10O75494 262 aaKnown RBP10.86□□□□□ -0.67
USP40-201ENST00000251722 MELTFP08582 738 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 SNRPD3P62318 126 aaKnown RBP10.86□□□□□ -0.67
USP40-201ENST00000251722 ZNF488Q96MN9 340 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 C1QTNF5Q9BXJ0 243 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 DICER1Q9UPY3 1922 aaKnown RBP10.86□□□□□ -0.67
USP40-201ENST00000251722 LYZL2Q7Z4W2 148 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 SGK494Q96LW2 274 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 TIMP3P35625 211 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 CD200R1LQ6Q8B3 271 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 KLK2P20151 261 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 SMIM8Q96KF7 97 aa10.86□□□□□ -0.67
USP40-201ENST00000251722 TRAV9-1A0A075B6T8 112 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 FAM157CP0CG43 387 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 ATP6V0CP27449 155 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 HIST1H1AQ02539 215 aaPredicted RBP10.85□□□□□ -0.67
USP40-201ENST00000251722 NEU1Q99519 415 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 IGHV2OR16-5A0A0B4J2B6 119 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 REG1BP48304 166 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 C10orf111Q8N326 155 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 LINC01560Q8TB33 94 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 NEUROG1Q92886 237 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 CSTL1Q9H114 145 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 SEMA5BQ9P283 1151 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 C7orf71A4D174 169 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 ZIC3O60481 467 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 KBTBD11O94819 623 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 CECR9P0C854 216 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 GPR183P32249 361 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 CAMPP49913 170 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 PRSS12P56730 875 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 CLDN18P56856 261 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 ZNF664Q8N3J9 261 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 SSMEM1Q8WWF3 244 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 SNHG12Q9BXW3 62 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 GPR132Q9UNW8 380 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 RAMP3O60896 148 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 PGLYRP1O75594 196 aaPredicted RBP10.85□□□□□ -0.67
USP40-201ENST00000251722 ACP7Q6ZNF0 438 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 ST20Q9HBF5 79 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 YAE1D1Q9NRH1 226 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 TUBD1Q9UJT1 453 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 RAXQ9Y2V3 346 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 PATJQ8NI35 1801 aa10.85□□□□□ -0.67
USP40-201ENST00000251722 C1QTNF9BB2RNN3 333 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 RND3P61587 244 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 RELBQ01201 579 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 TMEM140Q9NV12 185 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 TMEM144Q7Z5S9 345 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 BOD1L2Q8IYS8 172 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 FNDC4Q9H6D8 234 aaPredicted RBP10.84□□□□□ -0.67
USP40-201ENST00000251722 A8MWL6 223 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 VENTXO95231 258 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 SLAQ13239 276 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 LINC00312Q9Y6C7 94 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 TRAV9-2A0A087WT02 112 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 AMBPP02760 352 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 SPANXN1Q5VSR9 72 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 PXMP4Q9Y6I8 212 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 C17orf100A8MU93 164 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 APOMO95445 188 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 NPPCP23582 126 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 C17orf82Q86X59 251 aaPredicted RBP10.84□□□□□ -0.67
USP40-201ENST00000251722 PLSCR2Q9NRY7 297 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 LTBP1Q14766 1721 aa10.84□□□□□ -0.67
USP40-201ENST00000251722 AMY1AP04745 511 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 BSPH1Q075Z2 132 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 FAM219BQ5XKK7 198 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 PEMTQ9UBM1 199 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 ZIC4Q8N9L1 334 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 OR4D5Q8NGN0 318 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 MYOZ3Q8TDC0 251 aa10.83□□□□□ -0.68
USP40-201ENST00000251722 NPFFR1Q9GZQ6 430 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms