RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 H7C2G1 150 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 DNLZQ5SXM8 178 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 LINC00114Q6XXX2 140 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 FAM181BA6NEQ2 426 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 MOSP00540 346 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 MEF2CQ06413 473 aaPredicted RBP11.49□□□□□ -0.57
SF3A1-201ENST00000215793 PEAR1Q5VY43 1037 aaPredicted RBP11.49□□□□□ -0.57
SF3A1-201ENST00000215793 FAM90A1Q86YD7 464 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 SGK494Q96LW2 274 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 PMCHL2Q9BQD1 86 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 DOPEY2Q9Y3R5 2298 aa11.49□□□□□ -0.57
SF3A1-201ENST00000215793 PLP1P60201 277 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 JOSD1Q15040 202 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 SDHCQ99643 169 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 TDRD6O60522 2096 aaKnown RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 IGHV3-48P01763 117 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 CENPVQ7Z7K6 275 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 OR4D5Q8NGN0 318 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 DUX5Q96PT3 197 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 MRPS18CQ9Y3D5 142 aaKnown RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 TRBV20OR9-2A0A075B6H5 130 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 IGKV1D-43A0A0B4J1Z2 117 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 ACSF3Q4G176 576 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 FADS6Q8N9I5 356 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 NEU4Q8WWR8 484 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 IMMP1LQ96LU5 166 aa11.48□□□□□ -0.57
SF3A1-201ENST00000215793 GEMIN7Q9H840 131 aaKnown RBP11.48□□□□□ -0.57
SF3A1-201ENST00000215793 NPIPB7O75200 414 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 PPP1R17O96001 155 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 CELA3AP09093 270 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 ICAM4Q14773 271 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 ZNF56Q15929 161 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 CACNG8Q8WXS5 425 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 MRPS16Q9Y3D3 137 aaKnown RBP11.47□□□□□ -0.57
SF3A1-201ENST00000215793 SPTBN2O15020 2390 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 COL4A1P02462 1669 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 KBTBD11-OT1A0A1B0GTJ5 212 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 HIST1H1AQ02539 215 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-201ENST00000215793 SSBP3Q9BWW4 388 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-201ENST00000215793 FOXI3A8MTJ6 420 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-201ENST00000215793 FAM27E3Q08E93 113 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 DCTN5Q9BTE1 182 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 FAM74A4Q5TZK3 123 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 RTN4RL2Q86UN3 420 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 LINC01560Q8TB33 94 aa11.47□□□□□ -0.57
SF3A1-201ENST00000215793 IGHV3-35A0A0C4DH35 117 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 A0A0G2JLM5 398 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 MSGN1A6NI15 193 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 TGFBR3LH3BV60 316 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 TRGV3P03979 118 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 SOD3P08294 240 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 CARHSP1Q9Y2V2 147 aaKnown RBP11.46□□□□□ -0.57
SF3A1-201ENST00000215793 GRIFINA4D1Z8 144 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 OR11H12B2RN74 326 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 SCGB1A1P11684 91 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 OR11H1Q8NG94 326 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 OR11H2Q8NH07 326 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 KLK15Q9H2R5 256 aa11.46□□□□□ -0.57
SF3A1-201ENST00000215793 A0A1B0GTI1 187 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 H7C1H1 209 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 ZP1P60852 638 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 PSG7Q13046 419 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 MRPL14Q6P1L8 145 aaKnown RBP11.46□□□□□ -0.58
SF3A1-201ENST00000215793 DMRT1Q9Y5R6 373 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 COL5A3P25940 1745 aaPredicted RBP11.46□□□□□ -0.58
SF3A1-201ENST00000215793 ZNFX1Q9P2E3 1918 aaKnown RBP11.46□□□□□ -0.58
SF3A1-201ENST00000215793 STRCP1A6NGW2 1772 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 IGHV2OR16-5A0A0B4J2B6 119 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 C7orf71A4D174 169 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 EGR1P18146 543 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 NUTF2P61970 127 aaKnown RBP11.46□□□□□ -0.58
SF3A1-201ENST00000215793 TMEM183AQ8IXX5 376 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 MYO16Q9Y6X6 1858 aa11.46□□□□□ -0.58
SF3A1-201ENST00000215793 SPTBN1Q01082 2364 aaKnown RBP11.46□□□□□ -0.58
SF3A1-201ENST00000215793 IGLV3-12A0A075B6K2 115 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 C17orf98A8MV24 154 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 OTX1P32242 354 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-201ENST00000215793 MEIG1Q5JSS6 88 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 OR13A1Q8NGR1 328 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 CCL19Q99731 98 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 FBXL15Q9H469 300 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 CBLN1P23435 193 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 RNASEH2CQ8TDP1 164 aaKnown RBP11.45□□□□□ -0.58
SF3A1-201ENST00000215793 C21orf62Q9NYP8 219 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 CEACAM4O75871 244 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 FAM216BQ8N7L0 139 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 FBLN5Q9UBX5 448 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 EFNB1P98172 346 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 RTBDNQ9BSG5 229 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-201ENST00000215793 SOX21Q9Y651 276 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-201ENST00000215793 LINC00312Q9Y6C7 94 aa11.45□□□□□ -0.58
SF3A1-201ENST00000215793 IQCF6A8MYZ5 107 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 IGFBP3P17936 291 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-201ENST00000215793 TAS2R60P59551 318 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 IL36BQ9NZH7 164 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 EFEMP2O95967 443 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 LINC00518Q8N0U6 118 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 FAM57AQ8TBR7 257 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 FBXL7Q9UJT9 491 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 PROB1E7EW31 1015 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms