RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DIAPH2-AS1Q14236 149 aa8.8□□□□□ -1
USP28-201ENST00000003302 FXYD3Q14802 87 aa8.8□□□□□ -1
USP28-201ENST00000003302 KRTCAP3Q53RY4 240 aa8.8□□□□□ -1
USP28-201ENST00000003302 FAM216AQ8WUB2 273 aa8.8□□□□□ -1
USP28-201ENST00000003302 RND1Q92730 232 aa8.8□□□□□ -1
USP28-201ENST00000003302 DDA1Q9BW61 102 aa8.8□□□□□ -1
USP28-201ENST00000003302 WDR83OSQ9Y284 106 aa8.8□□□□□ -1
USP28-201ENST00000003302 OOEPA6NGQ2 149 aa8.79□□□□□ -1
USP28-201ENST00000003302 CGAP01215 116 aa8.79□□□□□ -1
USP28-201ENST00000003302 OR10W1Q8NGF6 305 aa8.79□□□□□ -1
USP28-201ENST00000003302 SNHG12Q9BXW3 62 aa8.79□□□□□ -1
USP28-201ENST00000003302 POLR3KQ9Y2Y1 108 aaPredicted RBP8.79□□□□□ -1
USP28-201ENST00000003302 KLRC4-KLRK1H3BQV0 150 aa8.79□□□□□ -1
USP28-201ENST00000003302 YKT6O15498 198 aa8.79□□□□□ -1
USP28-201ENST00000003302 OR10J4P0C629 311 aa8.79□□□□□ -1
USP28-201ENST00000003302 IGFBP2P18065 325 aa8.79□□□□□ -1
USP28-201ENST00000003302 PRDX2P32119 198 aa8.79□□□□□ -1
USP28-201ENST00000003302 VDAC2P45880 294 aaPredicted RBP8.79□□□□□ -1
USP28-201ENST00000003302 ZNF83P51522 516 aa8.79□□□□□ -1
USP28-201ENST00000003302 RELBQ01201 579 aa8.79□□□□□ -1
USP28-201ENST00000003302 VWC2Q2TAL6 325 aa8.79□□□□□ -1
USP28-201ENST00000003302 CT45A1Q5HYN5 189 aa8.79□□□□□ -1
USP28-201ENST00000003302 TMEM144Q7Z5S9 345 aa8.79□□□□□ -1
USP28-201ENST00000003302 CT45A3Q8NHU0 189 aa8.79□□□□□ -1
USP28-201ENST00000003302 PINX1Q96BK5 328 aaKnown RBP8.79□□□□□ -1
USP28-201ENST00000003302 NEIL1Q96FI4 390 aaPredicted RBP8.79□□□□□ -1
USP28-201ENST00000003302 SGK494Q96LW2 274 aa8.79□□□□□ -1
USP28-201ENST00000003302 KCNIP1Q9NZI2 227 aa8.79□□□□□ -1
USP28-201ENST00000003302 IGHV2OR16-5A0A0B4J2B6 119 aa8.79□□□□□ -1
USP28-201ENST00000003302 SPRY3O43610 288 aa8.79□□□□□ -1
USP28-201ENST00000003302 TNFSF13O75888 250 aa8.79□□□□□ -1
USP28-201ENST00000003302 PRAMEF5Q5TYX0 476 aa8.79□□□□□ -1
USP28-201ENST00000003302 Q6ZT83 130 aa8.79□□□□□ -1
USP28-201ENST00000003302 GGCTO75223 188 aaKnown RBP8.78□□□□□ -1
USP28-201ENST00000003302 COX5AP20674 150 aa8.78□□□□□ -1
USP28-201ENST00000003302 CASP6P55212 293 aa8.78□□□□□ -1
USP28-201ENST00000003302 TCL1AP56279 114 aa8.78□□□□□ -1
USP28-201ENST00000003302 MIR17HGQ75NE6 70 aa8.78□□□□□ -1
USP28-201ENST00000003302 MOGAT3Q86VF5 341 aa8.78□□□□□ -1
USP28-201ENST00000003302 DOLPP1Q86YN1 238 aa8.78□□□□□ -1
USP28-201ENST00000003302 ZNF503Q96F45 646 aa8.78□□□□□ -1
USP28-201ENST00000003302 RNASE7Q9H1E1 156 aaKnown RBP8.78□□□□□ -1
USP28-201ENST00000003302 KLF13Q9Y2Y9 288 aaPredicted RBP8.78□□□□□ -1
USP28-201ENST00000003302 PXMP4Q9Y6I8 212 aa8.78□□□□□ -1
USP28-201ENST00000003302 SPAARA0A1B0GVQ0 90 aa8.78□□□□□ -1
USP28-201ENST00000003302 TMEM250H0YL14 139 aa8.78□□□□□ -1
USP28-201ENST00000003302 RPL31P62899 125 aaKnown RBP8.78□□□□□ -1
USP28-201ENST00000003302 GUSBP1Q15486 140 aa8.78□□□□□ -1
USP28-201ENST00000003302 REC114Q7Z4M0 266 aa8.78□□□□□ -1
USP28-201ENST00000003302 NINJ1Q92982 152 aa8.78□□□□□ -1
USP28-201ENST00000003302 HEYLQ9NQ87 328 aaPredicted RBP8.78□□□□□ -1
USP28-201ENST00000003302 TMEM140Q9NV12 185 aa8.78□□□□□ -1
USP28-201ENST00000003302 ELOA3CA0A087WX78 387 aaPredicted RBP8.78□□□□□ -1
USP28-201ENST00000003302 PKIAP61925 76 aa8.78□□□□□ -1
USP28-201ENST00000003302 Q6ZWC4 215 aa8.78□□□□□ -1
USP28-201ENST00000003302 ACTR3CQ9C0K3 210 aaPredicted RBP8.78□□□□□ -1
USP28-201ENST00000003302 SP9P0CG40 484 aa8.78□□□□□ -1
USP28-201ENST00000003302 PAX5Q02548 391 aa8.78□□□□□ -1
USP28-201ENST00000003302 MOB1BQ7L9L4 216 aa8.78□□□□□ -1
USP28-201ENST00000003302 FAM168AQ92567 244 aa8.78□□□□□ -1
USP28-201ENST00000003302 OR2V2Q96R30 315 aa8.78□□□□□ -1
USP28-201ENST00000003302 ELOVL5Q9NYP7 299 aa8.78□□□□□ -1
USP28-201ENST00000003302 SAA2-SAA4A0A096LPE2 208 aa8.77□□□□□ -1
USP28-201ENST00000003302 GATCO43716 136 aaKnown RBP8.77□□□□□ -1
USP28-201ENST00000003302 SAA2P0DJI9 122 aaPredicted RBP8.77□□□□□ -1
USP28-201ENST00000003302 APELAP0DMC3 54 aa8.77□□□□□ -1
USP28-201ENST00000003302 GPR12P47775 334 aa8.77□□□□□ -1
USP28-201ENST00000003302 MRPL41Q8IXM3 137 aaKnown RBP8.77□□□□□ -1
USP28-201ENST00000003302 FAM216BQ8N7L0 139 aa8.77□□□□□ -1
USP28-201ENST00000003302 MANBALQ9NQG1 85 aa8.77□□□□□ -1
USP28-201ENST00000003302 TRAV5A0A0B4J249 113 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 G0S2P27469 103 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 REG1BP48304 166 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 GMPPAQ96IJ6 420 aaPredicted RBP8.77□□□□□ -1.01
USP28-201ENST00000003302 RCHY1Q96PM5 261 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 EFNB3Q15768 340 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 USF2Q15853 346 aaPredicted RBP8.77□□□□□ -1.01
USP28-201ENST00000003302 C17orf58Q2M2W7 97 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 C10orf55Q5SWW7 151 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 RAB29O14966 203 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 CD24P25063 80 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 GBGT1Q8N5D6 347 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 ST6GALNAC3Q8NDV1 305 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 SFRP2Q96HF1 295 aa8.77□□□□□ -1.01
USP28-201ENST00000003302 MRPL37Q9BZE1 423 aaKnown RBP8.77□□□□□ -1.01
USP28-201ENST00000003302 PDLIM4P50479 330 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 OR9G1Q8NH87 305 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 STARD4Q96DR4 205 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 RALYQ9UKM9 306 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 TCF19Q9Y242 345 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 CNN1P51911 297 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 SPCS3P61009 180 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 COA6Q5JTJ3 125 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 STPG3Q8N7X2 389 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 MRPL36Q9P0J6 103 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 TRAPPC1Q9Y5R8 145 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 C21orf140B9A014 251 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 FAM90A26D6RGX4 464 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 CA2P00918 260 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 Q8IYB0 196 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms