RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZNF788Q6ZQV5 615 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SSBP3Q9BWW4 388 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 IL23AQ9NPF7 189 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 GBF1Q92538 1859 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 A6NCN8 305 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE12HA6NDE8 117 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 PFN1P07737 140 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TRA2AQ13595 282 aaKnown RBP eCLIP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 KIR3DS1Q14943 382 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MST1LQ2TV78 715 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 UNQ5815/PRO19632Q6UWF5 114 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MOB3BQ86TA1 216 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 OR1B1Q8NGR6 318 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 OR4A5Q8NH83 315 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 RP1P56715 2156 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 FER1L6Q2WGJ9 1857 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 K7ESF4 209 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MGST3O14880 152 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TOMM40O96008 361 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 NPSP0C0P6 89 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 B4GALT1P15291 398 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF32P17041 273 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 LGALS4P56470 323 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SRSF3P84103 164 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 CCL14Q16627 93 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF585BQ52M93 769 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF562Q6V9R5 426 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SSMEM1Q8WWF3 244 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 FNDC4Q9H6D8 234 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SPANXB1Q9NS25 103 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MYO16Q9Y6X6 1858 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 FCGR2BP31994 310 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 DGAT2L7PQ6IED9 249 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 KIR2DL4Q99706 377 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 WNT10AQ9GZT5 417 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ANAPC10Q9UM13 185 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TBX6O95947 436 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 FLYWCH2Q96CP2 140 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 R4GN57 208 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4EA0A075B759 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 H7C1H1 209 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 GOSR1O95249 250 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 GRPP07492 148 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4FP0DN26 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PRDX2P32119 198 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 GFI1BQ5VTD9 330 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 MIC13Q5XKP0 118 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FAM234AQ9H0X4 552 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 C1RLQ9NZP8 487 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4AQ9Y536 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PPIHO43447 177 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FOXL2P58012 376 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 RPL8P62917 257 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FBXW9Q5XUX1 488 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF818PQ6ZRF7 136 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 SYT8Q8NBV8 401 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FSCN3Q9NQT6 498 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 TCF19Q9Y242 345 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF785A8K8V0 405 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 NPIPB11E5RHQ5 1161 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 IFITM1P13164 125 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 GPR6P46095 362 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 WDR83OSQ9Y284 106 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 TRBV6-6A0A0A6YYG2 114 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 J3KT08 172 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 UNC119Q13432 240 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 SPATA31B1PQ5VZV4 182 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF418Q8TF45 676 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 WDR54Q9H977 334 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 NHP2Q9NX24 153 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 COL16A1Q07092 1604 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ZNFX1Q9P2E3 1918 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PEX7O00628 323 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 APOHP02749 345 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ID4P47928 161 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 LGALS7P47929 136 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 CRYBA2P53672 197 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 WIPF2Q8TF74 440 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 TM4SF19Q96DZ7 209 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 LOC105371242A0A075B767 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4CA0A0B4J2A2 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 A6NNC1 897 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 C9orf172C9J069 976 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 YPEL1O60688 119 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4GP0DN37 164 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 UTF1Q5T230 341 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 FHL5Q5TD97 284 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 ADAMTSL5Q6ZMM2 481 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 DEFB125Q8N687 156 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 SARAFQ96BY9 339 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 YPEL2Q96QA6 119 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 HDHD3Q9BSH5 251 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 MRPS18CQ9Y3D5 142 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 STRCP1A6NGW2 1772 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 IGKCP01834 107 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 PSG1P11464 419 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 MRPL43Q8N983 215 aaKnown RBP3.98□□□□□ -1.77
SCN1A-220ENST00000641603 OTORQ9NRC9 128 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 A0A1W2PPE3 182 aa3.98□□□□□ -1.77
SCN1A-220ENST00000641603 TFPI2P48307 235 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms