RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	TNFRSF9	Q07011	255 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	VMA21	Q3ZAQ7	101 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	ACOT7L	Q6ZUV0	252 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	ZNF429	Q86V71	674 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	DYNAP	Q8N1N2	210 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	OR52E5	Q8NH55	327 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	VSTM2A	Q8TAG5	236 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	RAB40C	Q96S21	281 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	MFF	Q9GZY8	342 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	MAGT1	Q9H0U3	335 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	FKBP11	Q9NYL4	201 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	PRND	Q9UKY0	176 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	HSPB11	Q9Y547	144 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	ABCA1	O95477	2261 aa		9.47	□□□□□ -0.89
CLN6-223	ENST00000637823	TRAV3	A0A0B4J244	114 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	TRAV40	A0A0B4J280	105 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	SSSCA1	O60232	199 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	KBTBD11	O94819	623 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	OR2F2	O95006	317 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	VENTX	O95231	258 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	MOS	P00540	346 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	SAA1	P0DJI8	122 aa	Predicted RBP	9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	CXCL2	P19875	107 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	BRS3	P32247	399 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	P2RY1	P47900	373 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	SPCS3	P61009	180 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	OR2F1	Q13607	317 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	EBI3	Q14213	229 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	THNSL2	Q86YJ6	484 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	TEX45	Q8NA69	505 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	OR2T10	Q8NGZ9	312 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	TMEM167A	Q8TBQ9	72 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	C17orf50	Q8WW18	174 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	RITA1	Q96K30	269 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	SMIM8	Q96KF7	97 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	QTRT1	Q9BXR0	403 aa	Known RBP	9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	RBKS	Q9H477	322 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	C11orf1	Q9H5F2	150 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	TMEM14B	Q9NUH8	114 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	FOXA2	Q9Y261	457 aa	Predicted RBP	9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	ITPR3	Q14573	2671 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	TEX15	Q9BXT5	2789 aa		9.46	□□□□□ -0.9
CLN6-223	ENST00000637823	C15orf61	A6NNL5	157 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	GPR137B	O60478	399 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	NXPH3	O95157	252 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	LY86	O95711	162 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	AVP	P01185	164 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	IFNA17	P01571	189 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	FGF2	P09038	288 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	IGHV4-38-2	P0DP08	117 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	RPL12	P30050	165 aa	Known RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	TAS2R30	P59541	319 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	HSPE1	P61604	102 aa	Known RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	RPL23A	P62750	156 aa	Known RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	ZNF345	Q14585	488 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	PSG5	Q15238	335 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	PDLIM3	Q53GG5	364 aa	Predicted RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	TMUB2	Q71RG4	321 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	KCNRG	Q8N5I3	272 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	RBMXL1	Q96E39	390 aa	Known RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	EAF1	Q96JC9	268 aa	Predicted RBP	9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	AQP10	Q96PS8	301 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	MEGF9	Q9H1U4	602 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	ZNF257	Q9Y2Q1	563 aa		9.45	□□□□□ -0.9
CLN6-223	ENST00000637823	PLXNB1	O43157	2135 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	IGHV3OR16-10	A0A075B7F0	116 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	RNF222	A6NCQ9	220 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	SLC25A17	O43808	307 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	SPDEF	O95238	335 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	IGKV1D-33	P01593	117 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	IGKV1-33	P01594	117 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	CRYGB	P07316	175 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	SNRNP70	P08621	437 aa	Known RBP	9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	FAM106CP	P0CH98	169 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	HKR1	P10072	659 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	S100A11	P31949	105 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	MAS1L	P35410	378 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	PAX9	P55771	341 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	OR2B8P	P59922	312 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	RPL8	P62917	257 aa	Known RBP	9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	KLF17	Q5JT82	389 aa	Predicted RBP	9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	RUSC1-AS1	Q66K80	236 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	NPB	Q8NG41	125 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	CIB3	Q96Q77	187 aa	Predicted RBP	9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	SLC25A31	Q9H0C2	315 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	PLSCR3	Q9NRY6	295 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	NUP50	Q9UKX7	468 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	FAM96B	Q9Y3D0	163 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	BOLA1	Q9Y3E2	137 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	OR51B2	Q9Y5P1	312 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	WSB1	Q9Y6I7	421 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	CCDC168	Q8NDH2	2452 aa		9.44	□□□□□ -0.9
CLN6-223	ENST00000637823	VPS13C	Q709C8	3753 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	ZAN	Q9Y493	2812 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	CSPG4	Q6UVK1	2322 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	NBPF19	A0A087WUL8	3843 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	TEX50	A0A1B0GTY4	177 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	CEBPZOS	A8MTT3	80 aa		9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	SMAD7	O15105	426 aa	Known RBP	9.43	□□□□□ -0.9
CLN6-223	ENST00000637823	KCNAB3	O43448	404 aa		9.43	□□□□□ -0.9

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