RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CD33P20138 364 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 LHFPL1Q86WI0 220 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 ZNF491Q8N8L2 437 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 OR4D10Q8NGI6 311 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 OR4A5Q8NH83 315 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 TMEM167AQ8TBQ9 72 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 SRSF12Q8WXF0 261 aaKnown RBP16.15■□□□□ 0.18
CLN3-240ENST00000631023 ZNF486Q96H40 463 aaPredicted RBP16.15■□□□□ 0.18
CLN3-240ENST00000631023 BET1LQ9NYM9 111 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 VSIG4Q9Y279 399 aa16.15■□□□□ 0.18
CLN3-240ENST00000631023 DISC1C4P0D8 188 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 MAS1LP35410 378 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 MYCNOSP40205 109 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 SCGB2B2Q4G0G5 96 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 WFDC9Q8NEX5 89 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 C4orf3Q8WVX3 66 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 SPIN2AQ99865 258 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 SPIN2BQ9BPZ2 258 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 SLA2Q9H6Q3 261 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 HRASLSQ9HDD0 168 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 ZNF355PQ9NSJ1 428 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 COMMD9Q9P000 198 aa16.14■□□□□ 0.17
CLN3-240ENST00000631023 DPPA5A6NC42 116 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 MPPED1O15442 326 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 ERVK-16P61578 105 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 POU2AF1Q16633 256 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 OR4A47Q6IF82 309 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 DMBX1Q8NFW5 382 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 OR5T1Q8NG75 326 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 ZFAND1Q8TCF1 268 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 SLC2A9Q9NRM0 540 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 FAM212BQ9NTI7 297 aaPredicted RBP16.13■□□□□ 0.17
CLN3-240ENST00000631023 H3BUA1 57 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 CCL24O00175 119 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 S1PR2O95136 353 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 PTBP1P26599 531 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLN3-240ENST00000631023 ECI1P42126 302 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 LPAR6P43657 344 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 RPL8P62917 257 aaKnown RBP16.13■□□□□ 0.17
CLN3-240ENST00000631023 KIAA0141Q14154 515 aaPredicted RBP16.13■□□□□ 0.17
CLN3-240ENST00000631023 PYDC2Q56P42 97 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 SPANXN2Q5MJ10 180 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 TBC1D26Q86UD7 250 aa16.13■□□□□ 0.17
CLN3-240ENST00000631023 THAP7Q9BT49 309 aaPredicted RBP16.13■□□□□ 0.17
CLN3-240ENST00000631023 ANKRD20A5PA0PJZ0 165 aa16.12■□□□□ 0.17
CLN3-240ENST00000631023 CASTOR1Q8WTX7 329 aa16.12■□□□□ 0.17
CLN3-240ENST00000631023 MS4A10Q96PG2 267 aa16.12■□□□□ 0.17
CLN3-240ENST00000631023 TRGV3P03979 118 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 PPP5CP53041 499 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 TPPP2P59282 170 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 RND3P61587 244 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 ETV3LQ6ZN32 361 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 CCDC190Q86UF4 302 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 MRPL41Q8IXM3 137 aaKnown RBP16.11■□□□□ 0.17
CLN3-240ENST00000631023 OR4C16Q8NGL9 310 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 RAX2Q96IS3 184 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 P2RX4Q99571 388 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 PRRT1Q99946 306 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 V9GYH0 126 aa16.11■□□□□ 0.17
CLN3-240ENST00000631023 MARCH11A6NNE9 402 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 ZNF735P0CB33 412 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 APELAP0DMC3 54 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 HLA-GP17693 338 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 RPL27AP46776 148 aaKnown RBP16.1■□□□□ 0.17
CLN3-240ENST00000631023 PIGPP57054 158 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 ZNF585BQ52M93 769 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 ASPHD1Q5U4P2 390 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 FAAP20Q6NZ36 180 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 Q8N402 240 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 LINC00482Q8N8I6 264 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 CCDC71LQ8N9Z2 235 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 GNB4Q9HAV0 340 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 TMEM140Q9NV12 185 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 COA4Q9NYJ1 87 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 COPZ2Q9P299 210 aa16.1■□□□□ 0.17
CLN3-240ENST00000631023 UPK2O00526 184 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 BRI3O95415 125 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 FGF2P09038 288 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 OR9G9P0C7N8 305 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 PI3P19957 117 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 ETV6P41212 452 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 AP3S2P59780 193 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 RUNX1Q01196 453 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 DEFB136Q30KP8 78 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 SLC25A42Q86VD7 318 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 CADM3Q8N126 398 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 MARCH1Q8TCQ1 289 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 RCC1LQ96I51 464 aaKnown RBP16.09■□□□□ 0.17
CLN3-240ENST00000631023 DUX3Q96PT4 197 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 SCP2D1Q9UJQ7 156 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 A0A0G2JLM5 398 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 I3L521 148 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 KRASP01116 189 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 SURF2Q15527 256 aaPredicted RBP16.09■□□□□ 0.17
CLN3-240ENST00000631023 C10orf55Q5SWW7 151 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 OR11H1Q8NG94 326 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 OR6Q1Q8NGQ2 317 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 OR13C8Q8NGS7 320 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 FYTTD1Q96QD9 318 aaKnown RBP16.09■□□□□ 0.17
CLN3-240ENST00000631023 OR5B12Q96R08 314 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms