RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MRPL20Q9BYC9 149 aaKnown RBP18■□□□□ 0.47
PNKP-220ENST00000627232 BET1LQ9NYM9 111 aa18■□□□□ 0.47
PNKP-220ENST00000627232 ZNF257Q9Y2Q1 563 aa18■□□□□ 0.47
PNKP-220ENST00000627232 SPTA1P02549 2419 aa18■□□□□ 0.47
PNKP-220ENST00000627232 A0A1W2PPH5 198 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 RBFOX3A6NFN3 312 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 IFNA10P01566 189 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 FGF7P21781 194 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 HOXA1P49639 335 aaPredicted RBP17.99■□□□□ 0.47
PNKP-220ENST00000627232 PPT1P50897 306 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 CCL20P78556 96 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 OR10X1Q8NGY0 326 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 MIOXQ9UGB7 285 aa17.99■□□□□ 0.47
PNKP-220ENST00000627232 H0YJW9 148 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 RBP4P02753 201 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 TMEM177Q53S58 311 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 C11orf42Q8N5U0 333 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 TNFRSF14Q92956 283 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 ST6GALNAC6Q969X2 333 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 PCGF1Q9BSM1 259 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 SLC35B3Q9H1N7 401 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 A0A1B0GV50 99 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 MBP02144 154 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 IL3RAP26951 378 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 RAB11AP62491 216 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 DTX2Q86UW9 622 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 C8orf46Q8TAG6 207 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 NABP2Q9BQ15 211 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 TMEM133Q9H2Q1 129 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 ENY2Q9NPA8 101 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 FKBP11Q9NYL4 201 aa17.98■□□□□ 0.47
PNKP-220ENST00000627232 C17orf112F2Z3M2 114 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 SOX15O60248 233 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 KBTBD11O94819 623 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 IGKV1-16P04430 117 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 DLK1P80370 383 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 ZNF506Q5JVG8 444 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 ETV3LQ6ZN32 361 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 PDPNQ86YL7 162 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 ABHD12Q8N2K0 398 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 OR8B3Q8NGG8 313 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 RAB1CQ92928 201 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 OR8B2Q96RD0 313 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 VSIRQ9H7M9 311 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 WDR83OSQ9Y284 106 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 OR51B2Q9Y5P1 312 aa17.97■□□□□ 0.47
PNKP-220ENST00000627232 PRSS46E5RG02 174 aa17.96■□□□□ 0.47
PNKP-220ENST00000627232 ZNF709Q8N972 641 aa17.96■□□□□ 0.47
PNKP-220ENST00000627232 ITLN2Q8WWU7 325 aaPredicted RBP17.96■□□□□ 0.47
PNKP-220ENST00000627232 NEIL1Q96FI4 390 aaPredicted RBP17.96■□□□□ 0.47
PNKP-220ENST00000627232 TIMD4Q96H15 378 aa17.96■□□□□ 0.47
PNKP-220ENST00000627232 RCC1LQ96I51 464 aaKnown RBP17.96■□□□□ 0.47
PNKP-220ENST00000627232 NPCDR1Q9BY65 106 aa17.96■□□□□ 0.47
PNKP-220ENST00000627232 SRRM4A7MD48 611 aaKnown RBP17.95■□□□□ 0.46
PNKP-220ENST00000627232 RRHO14718 337 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 MPDU1O75352 247 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 CD1BP29016 333 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 NPBWR1P48145 328 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 RPS16P62249 146 aaKnown RBP17.95■□□□□ 0.46
PNKP-220ENST00000627232 ZNF726P1Q15940 193 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 CLRN3Q8NCR9 226 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 CLDND2Q8NHS1 167 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 LHX4Q969G2 390 aa17.95■□□□□ 0.46
PNKP-220ENST00000627232 FLYWCH2Q96CP2 140 aaKnown RBP17.95■□□□□ 0.46
PNKP-220ENST00000627232 ANKHD1Q8IWZ3 2542 aaKnown RBP17.94■□□□□ 0.46
PNKP-220ENST00000627232 FAM74A7A6NL05 159 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 H7C2Y5 167 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 F12P00748 615 aaPredicted RBP17.94■□□□□ 0.46
PNKP-220ENST00000627232 SOD3P08294 240 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 SAA1P0DJI8 122 aaPredicted RBP17.94■□□□□ 0.46
PNKP-220ENST00000627232 ATP5IP56385 69 aaPredicted RBP17.94■□□□□ 0.46
PNKP-220ENST00000627232 PRCDQ00LT1 54 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 FAM74A3Q4VXF1 159 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 KHDC3LQ587J8 217 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 AVPI1Q5T686 147 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 ZNF787Q6DD87 383 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 OR4A5Q8NH83 315 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 HARBI1Q96MB7 349 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 RARRES2Q99969 163 aa17.94■□□□□ 0.46
PNKP-220ENST00000627232 HSPB1P04792 205 aaKnown RBP17.93■□□□□ 0.46
PNKP-220ENST00000627232 MC5RP33032 325 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 RAB13P51153 203 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 PRRX1P54821 245 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 ELLP55199 621 aaPredicted RBP17.93■□□□□ 0.46
PNKP-220ENST00000627232 PMS2P11Q13670 270 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 WDR25Q64LD2 544 aaPredicted RBP17.93■□□□□ 0.46
PNKP-220ENST00000627232 ACSM6Q6P461 480 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 TGIF2LXQ8IUE1 241 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 SLC24A4Q8NFF2 622 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 OR4C13Q8NGP0 309 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 OR5B3Q8NH48 314 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 UNKLQ9H9P5 680 aaKnown RBP17.93■□□□□ 0.46
PNKP-220ENST00000627232 WASHC3Q9Y3C0 194 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 GNLYP22749 145 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 NPY1RP25929 384 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 ICAM4Q14773 271 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 TMEM170AQ8WVE7 144 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 PLEKHA3Q9HB20 300 aa17.93■□□□□ 0.46
PNKP-220ENST00000627232 PPIAL4CA0A0B4J2A2 164 aa17.92■□□□□ 0.46
PNKP-220ENST00000627232 LOC102723971A0A1B0GUV8 181 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms