RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PUSL1Q8N0Z8 303 aaKnown RBP12.24□□□□□ -0.45
TRIM28-209ENST00000597423 NPBQ8NG41 125 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 OR52E5Q8NH55 327 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 TMEM167AQ8TBQ9 72 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 ZDHHC16Q969W1 377 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 PITPNC1Q9UKF7 332 aa12.24□□□□□ -0.45
TRIM28-209ENST00000597423 ASH1LQ9NR48 2969 aaKnown RBP12.24□□□□□ -0.45
TRIM28-209ENST00000597423 L7N2F9 121 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 NBR2O15453 112 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 SLC25A17O43808 307 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 GPR137BO60478 399 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 MBPP02686 304 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 IL6RP08887 468 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 SLC25A4P12235 298 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 MAS1LP35410 378 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 SPCS3P61009 180 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 RPL8P62917 257 aaKnown RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 VAMP2P63027 116 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 RELBQ01201 579 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 RAB32Q13637 225 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 MMDQ15546 238 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 IZUMO4Q1ZYL8 232 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 CXorf66Q5JRM2 361 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 PRSS54Q6PEW0 395 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 NOXA1Q86UR1 476 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 MRPL41Q8IXM3 137 aaKnown RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 MMD2Q8IY49 270 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 WDR89Q96FK6 387 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 RAB40CQ96S21 281 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 SSX3Q99909 188 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 COMMD5Q9GZQ3 224 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 ENY2Q9NPA8 101 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 TMEM160Q9NX00 188 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 METTL1Q9UBP6 276 aaKnown RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 FOXA2Q9Y261 457 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 ZNF257Q9Y2Q1 563 aa12.23□□□□□ -0.45
TRIM28-209ENST00000597423 LSM5Q9Y4Y9 91 aaKnown RBP12.23□□□□□ -0.45
TRIM28-209ENST00000597423 CREBBPQ92793 2442 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 BTBD17A6NE02 478 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 NCBP2LA6PVI3 153 aaKnown RBP12.22□□□□□ -0.45
TRIM28-209ENST00000597423 E5RGE8 158 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 RRHO14718 337 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 IGLV2-23P01705 113 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 OR9G9P0C7N8 305 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 CD99P14209 185 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 HSPE1P61604 102 aaKnown RBP12.22□□□□□ -0.45
TRIM28-209ENST00000597423 TNFRSF9Q07011 255 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 CD300CQ08708 224 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 AARDQ4LEZ3 155 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 FAM120AOSQ5T036 256 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 TMEM65Q6PI78 240 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 ZNF546Q86UE3 836 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 PPP1R27Q86WC6 154 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 INO80EQ8NBZ0 244 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-209ENST00000597423 OR5B3Q8NH48 314 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 RITA1Q96K30 269 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 CIB3Q96Q77 187 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-209ENST00000597423 TMEM14BQ9NUH8 114 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 HSPB7Q9UBY9 170 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 NSG2Q9Y328 171 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 SIGLEC9Q9Y336 463 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 OR51B2Q9Y5P1 312 aa12.22□□□□□ -0.45
TRIM28-209ENST00000597423 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.22□□□□□ -0.451e-11■■■■■ 33.1
TRIM28-209ENST00000597423 C15orf61A6NNL5 157 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 HMSDA8MTL9 139 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 CEBPZOSA8MTT3 80 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 SMLR1H3BR10 107 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 K7EPK0 472 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 SYNGR2O43760 224 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 CHST1O43916 411 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 DEDDO75618 318 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 CD24P25063 80 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 EIF2B2P49770 351 aaKnown RBP12.21□□□□□ -0.45
TRIM28-209ENST00000597423 RPL23AP62750 156 aaKnown RBP12.21□□□□□ -0.45
TRIM28-209ENST00000597423 RPP30P78346 268 aaKnown RBP12.21□□□□□ -0.45
TRIM28-209ENST00000597423 PRSS8Q16651 343 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 FAM71E2Q8N5Q1 922 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 Q8N6K4 173 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 OR1L8Q8NGR8 309 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 OR5R1Q8NH85 324 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 RASL11BQ9BPW5 248 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 QTRT1Q9BXR0 403 aaKnown RBP12.21□□□□□ -0.45
TRIM28-209ENST00000597423 HIPK2Q9H2X6 1198 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 NOTCH2Q04721 2471 aa12.21□□□□□ -0.45
TRIM28-209ENST00000597423 ABCA2Q9BZC7 2435 aa12.21□□□□□ -0.46
TRIM28-209ENST00000597423 CR1P17927 2039 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 FXYD6-FXYD2A0A087WZ82 144 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 NDUFA3O95167 84 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 CRYGBP07316 175 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 C4BPBP20851 252 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 PAX6P26367 422 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 F2RL1P55085 397 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 TAS2R30P59541 319 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 OR2B8PP59922 312 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 POLR2GP62487 172 aaKnown RBP eCLIP12.2□□□□□ -0.46
TRIM28-209ENST00000597423 DEFB112Q30KQ8 113 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 PDLIM3Q53GG5 364 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-209ENST00000597423 Q5BKY6 102 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 C16orf82Q7Z2V1 217 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 DCUN1D4Q92564 292 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms