RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 UXS1Q8NBZ7 420 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 OR4C13Q8NGP0 309 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 OR4S2Q8NH73 311 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 COQ8AQ8NI60 647 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RBPMSQ93062 196 aaKnown RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 IL22RA2Q969J5 263 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 GPR146Q96CH1 333 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 FLYWCH2Q96CP2 140 aaKnown RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 DUX5Q96PT3 197 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 SSX3Q99909 188 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RNF5Q99942 180 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 PLSCR3Q9NRY6 295 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 PLXNB1O43157 2135 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 DNAH3Q8TD57 4116 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 MPTX1A8MV57 137 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 SHOXO15266 292 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 SSNA1O43805 119 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 MOSP00540 346 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 CRYGBP07316 175 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 CXCL3P19876 107 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 BRS3P32247 399 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 LGALS7P47929 136 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 RRAS2P62070 204 aaPredicted RBP7.51□□□□□ -1.21
TRIM28-208ENST00000597172 PSG5Q15238 335 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 FCN2Q15485 313 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 AANATQ16613 207 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 IZUMO4Q1ZYL8 232 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 MRGPRG-AS1Q2M3A8 158 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 LRRC75BQ2VPJ9 315 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 GGNBP1Q5YKI7 109 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 OR11H7Q8NGC8 314 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 OR2T10Q8NGZ9 312 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 OSR1Q8TAX0 266 aaPredicted RBP7.51□□□□□ -1.21
TRIM28-208ENST00000597172 CHAC2Q8WUX2 184 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 TAF15Q92804 592 aaKnown RBP eCLIP7.51□□□□□ -1.21
TRIM28-208ENST00000597172 R3HDM4Q96D70 268 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 WDR89Q96FK6 387 aaPredicted RBP7.51□□□□□ -1.21
TRIM28-208ENST00000597172 OR10C1Q96KK4 312 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 MED28Q9H204 178 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 COMMD9Q9P000 198 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 MMP24Q9Y5R2 645 aa7.51□□□□□ -1.21
TRIM28-208ENST00000597172 TRAV3A0A0B4J244 114 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 A6NDX4 124 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 HMX3A6NHT5 357 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 CCSO14618 274 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 SIX6O95475 246 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 HRASP01112 189 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 IGHV4-59P01825 116 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 OR9G9P0C7N8 305 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 FAM106CPP0CH98 169 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 SULT1A3P0DMM9 295 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 SULT1A4P0DMN0 295 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 NQO2P16083 231 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 IER3P46695 156 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 SRPXP78539 464 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 HES1Q14469 280 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 NMSQ5H8A3 153 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 SSX9Q7RTT3 188 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 PUSL1Q8N0Z8 303 aaKnown RBP7.5□□□□□ -1.21
TRIM28-208ENST00000597172 NPBQ8NG41 125 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 FAM110DQ8TAY7 271 aaPredicted RBP7.5□□□□□ -1.21
TRIM28-208ENST00000597172 WFDC12Q8WWY7 111 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 LSM10Q969L4 123 aaKnown RBP7.5□□□□□ -1.21
TRIM28-208ENST00000597172 RHOVQ96L33 236 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 CITED1Q99966 193 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 RAB18Q9NP72 206 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 TMED3Q9Y3Q3 217 aa7.5□□□□□ -1.21
TRIM28-208ENST00000597172 DUXBA0A1W2PPF3 345 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 MARCH11A6NNE9 402 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 H3BUX3 64 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 FCN1O00602 326 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 GOSR2O14653 212 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 SAA1P0DJI8 122 aaPredicted RBP7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TMEM11P17152 192 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 VDAC1P21796 283 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 BCAP31P51572 246 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 ARHGDIBP52566 201 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 H2BFSP57053 126 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 UBE2KP61086 200 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 LY6EQ16553 131 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 OR4A47Q6IF82 309 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 SIGLECL1Q8N7X8 197 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TEX45Q8NA69 505 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 DMBX1Q8NFW5 382 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 ZDHHC16Q969W1 377 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 HARBI1Q96MB7 349 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TSNAXQ99598 290 aaKnown RBP7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TPSG1Q9NRR2 321 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TMEM140Q9NV12 185 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 MGAT4CQ9UBM8 478 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 TCF19Q9Y242 345 aa7.49□□□□□ -1.21
TRIM28-208ENST00000597172 A0A1B0GUS0 222 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 C13orf42A0A1B0GVH6 325 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 DNAJC9-AS1A6NH13 148 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 UPK2O00526 184 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 RRHO14718 337 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 SLC25A17O43808 307 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 PITX3O75364 302 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 ATG12O94817 140 aa7.48□□□□□ -1.21
TRIM28-208ENST00000597172 OR2A4O95047 310 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms