RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RPL5P46777 297 aaKnown RBP12.53□□□□□ -0.4
TRIM28-206ENST00000595974 KRTAP10-11P60412 298 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 ADAD2Q8NCV1 583 aaKnown RBP12.53□□□□□ -0.4
TRIM28-206ENST00000595974 OR51H1Q8NH63 302 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 C15orf40Q8WUR7 153 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 COA4Q9NYJ1 87 aa12.53□□□□□ -0.4
TRIM28-206ENST00000595974 IGHV4OR15-8A0A075B7B6 117 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 A0A087WW49 117 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 C13orf42A0A1B0GVH6 325 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 NOL3O60936 208 aaKnown RBP12.52□□□□□ -0.41
TRIM28-206ENST00000595974 HPRT1P00492 218 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 HSPB1P04792 205 aaKnown RBP12.52□□□□□ -0.41
TRIM28-206ENST00000595974 TAS2R31P59538 309 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 C10orf55Q5SWW7 151 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 CMTM1Q8IZ96 169 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 OR4A5Q8NH83 315 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 BET1LQ9NYM9 111 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 COMMD9Q9P000 198 aa12.52□□□□□ -0.41
TRIM28-206ENST00000595974 CCDC59Q9P031 241 aaKnown RBP12.52□□□□□ -0.41
TRIM28-206ENST00000595974 GPR31O00270 319 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 OVOL1O14753 267 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 RGS5O15539 181 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 RLN1P04808 185 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 APELAP0DMC3 54 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 NQO2P16083 231 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 RPL27AP46776 148 aaKnown RBP12.51□□□□□ -0.41
TRIM28-206ENST00000595974 INSL3P51460 131 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 TSPAN5P62079 268 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 RPL8P62917 257 aaKnown RBP12.51□□□□□ -0.41
TRIM28-206ENST00000595974 DGCR2P98153 550 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 POU2AF1Q16633 256 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 VAX1Q5SQQ9 334 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 SSX9Q7RTT3 188 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 SLC25A42Q86VD7 318 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 DCUN1D4Q92564 292 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 USMG5Q96IX5 58 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 PLEKHA2Q9HB19 425 aa12.51□□□□□ -0.41
TRIM28-206ENST00000595974 K7EIL1 84 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 FGF2P09038 288 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 TBPP20226 339 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 S100GP29377 79 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 SLURP1P55000 103 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 OR4A47Q6IF82 309 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 LPCAT3Q6P1A2 487 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 LAX1Q8IWV1 398 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 TTC9CQ8N5M4 171 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 DYNC2LI1Q8TCX1 351 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 DLX4Q92988 240 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-206ENST00000595974 MIXL1Q9H2W2 232 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 MTFP1Q9UDX5 166 aa12.5□□□□□ -0.41
TRIM28-206ENST00000595974 WI2-2373I1.2A0A1W2PRP0 233 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 FAM223BA6NKX1 122 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 TEX22C9J3V5 150 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 PGLYRP1O75594 196 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-206ENST00000595974 S1PR2O95136 353 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 ZNF735P0CB33 412 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 HLA-GP17693 338 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 ZP3P21754 424 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 F2RP25116 425 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 DCTN2Q13561 401 aaKnown RBP12.49□□□□□ -0.41
TRIM28-206ENST00000595974 RNASE12Q5GAN4 147 aaKnown RBP12.49□□□□□ -0.41
TRIM28-206ENST00000595974 RNASE10Q5GAN6 216 aaKnown RBP12.49□□□□□ -0.41
TRIM28-206ENST00000595974 FAM223AQ8IWN6 122 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 OR52I2Q8NH67 350 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 ABHD1Q96SE0 405 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 RANGRFQ9HD47 186 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-206ENST00000595974 HRASLSQ9HDD0 168 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 KLK11Q9UBX7 282 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 SCOCQ9UIL1 159 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 ZNF257Q9Y2Q1 563 aa12.49□□□□□ -0.41
TRIM28-206ENST00000595974 TRBV9A0A0B4J1U6 114 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 IL6RP08887 468 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-206ENST00000595974 UCP3P55916 312 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 ERVK-16P61578 105 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 MRPS10P82664 201 aaKnown RBP12.48□□□□□ -0.41
TRIM28-206ENST00000595974 DEFA5Q01523 94 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 ZNF343Q6P1L6 599 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 ZNF429Q86V71 674 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 SLC38A6Q8IZM9 456 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 DMBX1Q8NFW5 382 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 FCAMRQ8WWV6 532 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 ISOC1Q96CN7 298 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 DGCR14Q96DF8 476 aaKnown RBP12.48□□□□□ -0.41
TRIM28-206ENST00000595974 FYTTD1Q96QD9 318 aaKnown RBP12.48□□□□□ -0.41
TRIM28-206ENST00000595974 RSRP1Q9BUV0 290 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 SLC2A9Q9NRM0 540 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 FAM212BQ9NTI7 297 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-206ENST00000595974 TMEM140Q9NV12 185 aa12.48□□□□□ -0.41
TRIM28-206ENST00000595974 DPPA5A6NC42 116 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 HMX3A6NHT5 357 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 MARCH11A6NNE9 402 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 NPIPB5A8MRT5 1133 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 H3BMQ9 156 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 GABARAPH6UMI1 98 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 M0QYG6 137 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 CTDSP2O14595 271 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 IFNA6P05013 189 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 RHOGP84095 191 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 SSBP1Q04837 148 aaKnown RBP12.47□□□□□ -0.41
TRIM28-206ENST00000595974 ARRDC1Q8N5I2 433 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms