RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 OR4D10Q8NGI6 311 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 OR4A5Q8NH83 315 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 TERB2Q8NHR7 220 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 TMEM167AQ8TBQ9 72 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 C4orf3Q8WVX3 66 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 SRSF12Q8WXF0 261 aaKnown RBP9.28□□□□□ -0.92
LIG3-213ENST00000590630 ZNF486Q96H40 463 aaPredicted RBP9.28□□□□□ -0.92
LIG3-213ENST00000590630 FAM210AQ96ND0 272 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 KLK15Q9H2R5 256 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 SLA2Q9H6Q3 261 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 FAM212BQ9NTI7 297 aaPredicted RBP9.28□□□□□ -0.92
LIG3-213ENST00000590630 BET1LQ9NYM9 111 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 VSIG4Q9Y279 399 aa9.28□□□□□ -0.92
LIG3-213ENST00000590630 DPPA5A6NC42 116 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 MSGN1A6NI15 193 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 H3BUA1 57 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 FGF2P09038 288 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 AKAIN1P0CW23 69 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 PGAM2P15259 253 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 CD33P20138 364 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 PTBP1P26599 531 aaKnown RBP eCLIP9.27□□□□□ -0.93
LIG3-213ENST00000590630 MYCNOSP40205 109 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 ECI1P42126 302 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 KIAA0141Q14154 515 aaPredicted RBP9.27□□□□□ -0.93
LIG3-213ENST00000590630 SCGB2B2Q4G0G5 96 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 SPANXN2Q5MJ10 180 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 OR4A47Q6IF82 309 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 ETV3LQ6ZN32 361 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 C18orf65Q6ZTR6 163 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 ZNF491Q8N8L2 437 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 WFDC9Q8NEX5 89 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 PHB2Q99623 299 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 SPIN2AQ99865 258 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 SPIN2BQ9BPZ2 258 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 SLC2A9Q9NRM0 540 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 V9GYH0 126 aa9.27□□□□□ -0.93
LIG3-213ENST00000590630 ANKRD20A5PA0PJZ0 165 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 MARCH11A6NNE9 402 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 DISC1C4P0D8 188 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 CCL24O00175 119 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 S1PR2O95136 353 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 BRI3O95415 125 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 ETV6P41212 452 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 PPP5CP53041 499 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 ERVK-16P61578 105 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 RND3P61587 244 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 RPL8P62917 257 aaKnown RBP9.26□□□□□ -0.93
LIG3-213ENST00000590630 RUNX1Q01196 453 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 PYDC2Q56P42 97 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 ASPHD1Q5U4P2 390 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 SSX9Q7RTT3 188 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 TBC1D26Q86UD7 250 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 CCDC190Q86UF4 302 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 CADM3Q8N126 398 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 LINC00482Q8N8I6 264 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 DMBX1Q8NFW5 382 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 OR4C16Q8NGL9 310 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 ZFAND1Q8TCF1 268 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 RAX2Q96IS3 184 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 P2RX4Q99571 388 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 PRRT1Q99946 306 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 THAP7Q9BT49 309 aaPredicted RBP9.26□□□□□ -0.93
LIG3-213ENST00000590630 HRASLSQ9HDD0 168 aa9.26□□□□□ -0.93
LIG3-213ENST00000590630 MPPED1O15442 326 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 OR9G9P0C7N8 305 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 ZNF735P0CB33 412 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 HLA-GP17693 338 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 PIGPP57054 158 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 TPPP2P59282 170 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 SURF2Q15527 256 aaPredicted RBP9.25□□□□□ -0.93
LIG3-213ENST00000590630 ZNF79Q15937 498 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 ZNF585BQ52M93 769 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 C10orf55Q5SWW7 151 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 FAAP20Q6NZ36 180 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 MRPL41Q8IXM3 137 aaKnown RBP9.25□□□□□ -0.93
LIG3-213ENST00000590630 Q8N402 240 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 OR5T1Q8NG75 326 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 CASTOR1Q8WTX7 329 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 TSC22D3Q99576 134 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 ZNF355PQ9NSJ1 428 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 TMEM140Q9NV12 185 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 SLC2A8Q9NY64 477 aa9.25□□□□□ -0.93
LIG3-213ENST00000590630 A0A0G2JLM5 398 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 I3L521 148 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 DUS4LO95620 317 aaKnown RBP9.24□□□□□ -0.93
LIG3-213ENST00000590630 TRGV3P03979 118 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 SERPINE2P07093 398 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 IL6RP08887 468 aaPredicted RBP9.24□□□□□ -0.93
LIG3-213ENST00000590630 PI3P19957 117 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 FAUP35544 74 aaKnown RBP9.24□□□□□ -0.93
LIG3-213ENST00000590630 LPAR6P43657 344 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 RPL27AP46776 148 aaKnown RBP9.24□□□□□ -0.93
LIG3-213ENST00000590630 AP3S2P59780 193 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 FHL3Q13643 280 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 DEFB136Q30KP8 78 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 SAMD5Q5TGI4 173 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 FOXB2Q5VYV0 432 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 SLC25A42Q86VD7 318 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 CCDC71LQ8N9Z2 235 aa9.24□□□□□ -0.93
LIG3-213ENST00000590630 ADAD2Q8NCV1 583 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms