RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MEGF9Q9H1U4 602 aa20.08■□□□□ 0.81
SHMT1-207ENST00000580002 FAM96BQ9Y3D0 163 aa20.08■□□□□ 0.81
SHMT1-207ENST00000580002 LSM5Q9Y4Y9 91 aaKnown RBP20.08■□□□□ 0.81
SHMT1-207ENST00000580002 S100A10P60903 97 aa20.08■□□□□ 0.8
SHMT1-207ENST00000580002 OR5AC2Q9NZP5 309 aa20.08■□□□□ 0.8
SHMT1-207ENST00000580002 PLXNB1O43157 2135 aa20.08■□□□□ 0.8
SHMT1-207ENST00000580002 ATG12O94817 140 aa20.07■□□□□ 0.8
SHMT1-207ENST00000580002 MPC2O95563 127 aa20.07■□□□□ 0.8
SHMT1-207ENST00000580002 MOSP00540 346 aa20.07■□□□□ 0.8
SHMT1-207ENST00000580002 POLR2GP62487 172 aaKnown RBP eCLIP20.07■□□□□ 0.8
SHMT1-207ENST00000580002 GRPEL2Q8TAA5 225 aa20.07■□□□□ 0.8
SHMT1-207ENST00000580002 FBXL15Q9H469 300 aa20.07■□□□□ 0.8
SHMT1-207ENST00000580002 UPK2O00526 184 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 OPN1MWP04001 364 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 HNRNPCP07910 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
SHMT1-207ENST00000580002 OPN1MW2P0DN77 364 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 OPN1MW3P0DN78 364 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 PSMB6P28072 239 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 CLCC1Q96S66 551 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 SPIN2AQ99865 258 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 SPIN2BQ9BPZ2 258 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 PLSCR3Q9NRY6 295 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 HIVEP1P15822 2718 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 K7EPK0 472 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 CRYGBP07316 175 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 SLC25A6P12236 298 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 LGALS7P47929 136 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 CYCSP99999 105 aaKnown RBP20.06■□□□□ 0.8
SHMT1-207ENST00000580002 ID3Q02535 119 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 EBI3Q14213 229 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 FAM71E2Q8N5Q1 922 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 Q8N6K4 173 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 OR2T10Q8NGZ9 312 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 SSX3Q99909 188 aa20.06■□□□□ 0.8
SHMT1-207ENST00000580002 TET2Q6N021 2002 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 FCN1O00602 326 aa20.05■□□□□ 0.8
SHMT1-207ENST00000580002 ST8SIA3O43173 380 aa20.05■□□□□ 0.8
SHMT1-207ENST00000580002 RBMXL2O75526 392 aaKnown RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 LY6G6DO95868 133 aa20.05■□□□□ 0.8
SHMT1-207ENST00000580002 NKX2-1P43699 371 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 UBE2KP61086 200 aa20.05■□□□□ 0.8
SHMT1-207ENST00000580002 MMDQ15546 238 aa20.05■□□□□ 0.8
SHMT1-207ENST00000580002 ZNF48Q96MX3 618 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 CTNNBIP1Q9NSA3 81 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 RCL1Q9Y2P8 373 aaKnown RBP20.05■□□□□ 0.8
SHMT1-207ENST00000580002 KBTBD11O94819 623 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 C1QBP02746 253 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 ZFP69Q49AA0 526 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 TMEM219Q86XT9 240 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 OR4A16Q8NH70 328 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 BET1LQ9NYM9 111 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 MBD2Q9UBB5 411 aa20.04■□□□□ 0.8
SHMT1-207ENST00000580002 METTL1Q9UBP6 276 aaKnown RBP20.04■□□□□ 0.8
SHMT1-207ENST00000580002 E7EUB6 86 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 OR2F2O95006 317 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 TMEM11P17152 192 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 BRS3P32247 399 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 ZDHHC16Q969W1 377 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 PPP1R14BQ96C90 147 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 ZNF430Q9H8G1 570 aaPredicted RBP20.03■□□□□ 0.8
SHMT1-207ENST00000580002 TMEM50AO95807 157 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 FBP1P09467 338 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 LY6EQ16553 131 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 C10orf55Q5SWW7 151 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 NOXA1Q86UR1 476 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 TMEM167AQ8TBQ9 72 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 COA4Q9NYJ1 87 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 SIGLEC9Q9Y336 463 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 POMT1Q9Y6A1 747 aa20.03■□□□□ 0.8
SHMT1-207ENST00000580002 FXYD6-FXYD2A0A087WZ82 144 aa20.02■□□□□ 0.8
SHMT1-207ENST00000580002 C15orf61A6NNL5 157 aa20.02■□□□□ 0.8
SHMT1-207ENST00000580002 VMA21Q3ZAQ7 101 aa20.02■□□□□ 0.8
SHMT1-207ENST00000580002 Q71RC1 249 aaPredicted RBP20.02■□□□□ 0.8
SHMT1-207ENST00000580002 TSNAXQ99598 290 aaKnown RBP20.02■□□□□ 0.8
SHMT1-207ENST00000580002 PIGBOS1A0A0B4J2F0 54 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 H3BUX3 64 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 RRHO14718 337 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 CHST1O43916 411 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 SSSCA1O60232 199 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 FAM106CPP0CH98 169 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 IAPPP10997 89 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 SPNS3Q6ZMD2 512 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 THNSL2Q86YJ6 484 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 ASB13Q8WXK3 278 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 TMUB1Q9BVT8 246 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 RBKSQ9H477 322 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 TMEM14BQ9NUH8 114 aa20.01■□□□□ 0.79
SHMT1-207ENST00000580002 NCBP2LA6PVI3 153 aaKnown RBP20■□□□□ 0.79
SHMT1-207ENST00000580002 NBR2O15453 112 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 SNAPC5O75971 98 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 TNFRSF9Q07011 255 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 TEX45Q8NA69 505 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 NPBQ8NG41 125 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 RNF5Q99942 180 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 GSX1Q9H4S2 264 aaPredicted RBP20■□□□□ 0.79
SHMT1-207ENST00000580002 C11orf1Q9H5F2 150 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 HSPB7Q9UBY9 170 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 NAV3Q8IVL0 2385 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 TEX50A0A1B0GTY4 177 aa20■□□□□ 0.79
SHMT1-207ENST00000580002 SH2D7A6NKC9 451 aaPredicted RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms