RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NBR2O15453 112 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 KBTBD11O94819 623 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 OR9G9P0C7N8 305 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 TMEM11P17152 192 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 CNTFRP26992 372 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 SRP14P37108 136 aaKnown RBP12.89□□□□□ -0.35
SS18-211ENST00000578954 CYCSP99999 105 aaKnown RBP12.89□□□□□ -0.35
SS18-211ENST00000578954 RELBQ01201 579 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 HES1Q14469 280 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 IZUMO4Q1ZYL8 232 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 MRGPRG-AS1Q2M3A8 158 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 THOC7Q6I9Y2 204 aaKnown RBP12.89□□□□□ -0.35
SS18-211ENST00000578954 Q6YL49 198 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 OR4D5Q8NGN0 318 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 ST6GAL2Q96JF0 529 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 NEURL2Q9BR09 285 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 RANBP3Q9H6Z4 567 aaPredicted RBP12.89□□□□□ -0.35
SS18-211ENST00000578954 CACNG5Q9UF02 275 aa12.89□□□□□ -0.35
SS18-211ENST00000578954 C13orf42A0A1B0GVH6 325 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 FAM25EA8MYX2 175 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 H3BUX3 64 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 SLC25A17O43808 307 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 IER3P46695 156 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 F2RL1P55085 397 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 RAP2BP61225 183 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 MMDQ15546 238 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 AKAP14Q86UN6 197 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 ZNF429Q86V71 674 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 OR5R1Q8NH85 324 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 C22orf15Q8WYQ4 148 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 CDC42EP3Q9UKI2 254 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 SIGLEC9Q9Y336 463 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 F8P00451 2351 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 TNCP24821 2201 aa12.88□□□□□ -0.35
SS18-211ENST00000578954 TRAV3A0A0B4J244 114 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 C15orf61A6NNL5 157 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 OR2F2O95006 317 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 CD83Q01151 205 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 SCGB2A2Q13296 93 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 HNF4GQ14541 408 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 PDLIM3Q53GG5 364 aaPredicted RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 C16orf82Q7Z2V1 217 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 FAM71E2Q8N5Q1 922 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 WDR89Q96FK6 387 aaPredicted RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 RBM14Q96PK6 669 aaKnown RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 FYTTD1Q96QD9 318 aaKnown RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 PDCD10Q9BUL8 212 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 TMEM14BQ9NUH8 114 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 C1RLQ9NZP8 487 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 PITPNC1Q9UKF7 332 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 PRNDQ9UKY0 176 aa12.87□□□□□ -0.35
SS18-211ENST00000578954 FOXA2Q9Y261 457 aaPredicted RBP12.87□□□□□ -0.35
SS18-211ENST00000578954 FAM90A26D6RGX4 464 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 FGF16O43320 207 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 CCNKO75909 580 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 ID3Q02535 119 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 C5orf64Q2M2E5 130 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 MMD2Q8IY49 270 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 TCTE3Q8IZS6 198 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 TMEM86BQ8N661 226 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 Q8N9W7 124 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 OR52E5Q8NH55 327 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 SSMEM1Q8WWF3 244 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 ZDHHC16Q969W1 377 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 FBXL15Q9H469 300 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 GSX1Q9H4S2 264 aaPredicted RBP12.86□□□□□ -0.35
SS18-211ENST00000578954 RANGRFQ9HD47 186 aaPredicted RBP12.86□□□□□ -0.35
SS18-211ENST00000578954 TPSG1Q9NRR2 321 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 KIAA1456Q9P272 454 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 METTL1Q9UBP6 276 aaKnown RBP12.86□□□□□ -0.35
SS18-211ENST00000578954 CACFD1Q9UGQ2 172 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 ZNF257Q9Y2Q1 563 aa12.86□□□□□ -0.35
SS18-211ENST00000578954 G3V3Q6 166 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 SNAPC5O75971 98 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 IGHV4-59P01825 116 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 MAS1LP35410 378 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 RPL8P62917 257 aaKnown RBP12.85□□□□□ -0.35
SS18-211ENST00000578954 PRSS8Q16651 343 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 PPP1R27Q86WC6 154 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 OR4A16Q8NH70 328 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 OR1S1Q8NH92 325 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 SLC25A33Q9BSK2 321 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 CHIAQ9BZP6 476 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 ZNF430Q9H8G1 570 aaPredicted RBP12.85□□□□□ -0.35
SS18-211ENST00000578954 FKBP11Q9NYL4 201 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 HSPB7Q9UBY9 170 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 NSG2Q9Y328 171 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 MOB4Q9Y3A3 225 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 POMT1Q9Y6A1 747 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 MTORP42345 2549 aa12.85□□□□□ -0.35
SS18-211ENST00000578954 ST8SIA3O43173 380 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 MBPP02686 304 aaPredicted RBP12.84□□□□□ -0.35
SS18-211ENST00000578954 NKX2-1P43699 371 aaPredicted RBP12.84□□□□□ -0.35
SS18-211ENST00000578954 OR2B8PP59922 312 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 CXorf66Q5JRM2 361 aaPredicted RBP12.84□□□□□ -0.35
SS18-211ENST00000578954 SIGLECL1Q8N7X8 197 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 OR5B3Q8NH48 314 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 PPP1R1CQ8WVI7 109 aa12.84□□□□□ -0.35
SS18-211ENST00000578954 QTRT1Q9BXR0 403 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms